{
    "type": "genome",
    "identifier": "GCF_001584185.1",
    "organism": "Collimonas pratensis",
    "title": "Collimonas pratensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Netherlands Institute of Ecology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001584185.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04195677",
        "wgs_master": "na",
        "refseq_category": "na",
        "taxid": "279113",
        "species_taxid": "279113",
        "organism_name": "Collimonas pratensis",
        "infraspecific_name": "strain=Ter91",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/03/09",
        "asm_name": "ASM158418v1",
        "asm_submitter": "Netherlands Institute of Ecology",
        "gbrs_paired_asm": "GCA_001584185.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/584/185/GCF_001584185.1_ASM158418v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5730025",
        "genome_size_ungapped": "5730025",
        "gc_percent": "58.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-03-03",
        "total_gene_count": "5207",
        "protein_coding_gene_count": "5043",
        "non_coding_gene_count": "66",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-03-09",
    "dateModified": "2016-03-09",
    "datePublished": "2016-03-09",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Collimonas pratensis"
        ],
        "sample_taxid": [
            "279113"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Netherlands: Terschelling"
        ],
        "sample_host_location_id": [],
        "data_size": "1.600 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5730025",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "5730025",
        "N50 (bp)": "5730025",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "58.7",
        "Number of CDSs": "5209",
        "Average Protein Length": "316.9",
        "Coding Ratio (%)": "86.4",
        "Number of rRNAs": "9",
        "Number of tRNAs": "53",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Collimonas pratensis",
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                "relation_to_type": "type",
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            },
            {
                "organism_name": "Collimonas humicola",
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                "validated": true,
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                "total_fragments": 1910,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Collimonas fungivorans",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Collimonas silvisoli",
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                "accession": "GCA_018305005.1",
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                "species_taxid": 2825884,
                "relation_to_type": "type",
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                "ani": 84.3843,
                "matched_fragments": 1114,
                "total_fragments": 1910,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Collimonas antrihumi",
                "strain": "strain=DSM 104040",
                "accession": "GCA_018304965.1",
                "taxid": 1940615,
                "species_taxid": 1940615,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.8585,
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                "total_fragments": 1910,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Collimonas arenae",
                "strain": "strain=Ter10",
                "accession": "GCA_001584165.1",
                "taxid": 279058,
                "species_taxid": 279058,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.6655,
                "matched_fragments": 1099,
                "total_fragments": 1910,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Herbaspirillum lusitanum",
                "strain": "strain=P6-12",
                "accession": "GCA_000256565.1",
                "taxid": 213312,
                "species_taxid": 213312,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.4369,
                "matched_fragments": 569,
                "total_fragments": 1910,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Noviherbaspirillum aridicola",
                "strain": "strain=NCCP-691",
                "accession": "GCA_019656455.1",
                "taxid": 2849687,
                "species_taxid": 2849687,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0976,
                "matched_fragments": 436,
                "total_fragments": 1910,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Duganella aceris",
                "strain": "strain=SAP-35",
                "accession": "GCA_011090165.1",
                "taxid": 2703883,
                "species_taxid": 2703883,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0349,
                "matched_fragments": 608,
                "total_fragments": 1910,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Massilia agri",
                "strain": "strain=JCM 31661",
                "accession": "GCA_024753255.1",
                "taxid": 1886785,
                "species_taxid": 1886785,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3417,
                "matched_fragments": 463,
                "total_fragments": 1910,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Massilia solisilvae",
                "strain": "strain=JCM 31607",
                "accession": "GCA_024753215.1",
                "taxid": 1811225,
                "species_taxid": 1811225,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.283,
                "matched_fragments": 448,
                "total_fragments": 1910,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_001584185.1",
                "gtdb_species": "s__Collimonas pratensis",
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                "matched_fragments": 1909,
                "total_fragments": 1910,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Collimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.16",
                "min_intra_species_ani": "98.11",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Collimonas",
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                "mean_intra_species_ani": "98.22",
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                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCF_002564105.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Collimonas",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            },
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                "accession": "GCF_000221045.1",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000786695.1",
                "gtdb_species": "s__Collimonas arenae_A",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
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        "bacillus_cell_shape": 1.0,
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    "_genome_taxon": [
        "Collimonas",
        "pratensis"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}