{ "type": "genome", "identifier": "GCF_001584615.1", "organism": "Brevibacterium ravenspurgense", "title": "Brevibacterium ravenspurgense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Public Health Agency of Canada", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001584615.1", "bioproject": "PRJNA224116", "biosample": "SAMN04317114", "wgs_master": "LQQC00000000.1", "refseq_category": "reference genome", "taxid": "479117", "species_taxid": "479117", "organism_name": "Brevibacterium ravenspurgense", "infraspecific_name": "strain=CCUG56047", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/03/09", "asm_name": "ASM158461v1", "asm_submitter": "Public Health Agency of Canada", "gbrs_paired_asm": "GCA_001584615.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/584/615/GCF_001584615.1_ASM158461v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2297397", "genome_size_ungapped": "2297397", "gc_percent": "62.500000", "replicon_count": "0", "scaffold_count": "14", "contig_count": "14", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001584615.1-RS_2024_04_26", "annotation_date": "2024-04-26", "total_gene_count": "2063", "protein_coding_gene_count": "1991", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-03-09", "dateModified": "2016-03-09", "datePublished": "2016-03-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Brevibacterium ravenspurgense" ], "sample_taxid": [ "479117" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Ravensburg" ], "sample_host_location_id": [], "data_size": "0.642 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2297397", "Number of Sequences": "14", "Longest Sequences (bp)": "843292", "N50 (bp)": "252487", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.4", "Number of CDSs": "2029", "Average Protein Length": "339.7", "Coding Ratio (%)": "90.0", "Number of rRNAs": "5", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Brevibacterium ravenspurgense", "strain": "strain=CCUG56047", "accession": "GCA_001584615.1", "taxid": 479117, 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"status": "below_threshold" }, { "organism_name": "Brevibacterium daeguense", "strain": "strain=DSM 27938", "accession": "GCA_021729135.1", "taxid": 909936, "species_taxid": 909936, "relation_to_type": "type", "validated": true, "ani": 77.5979, "matched_fragments": 178, "total_fragments": 760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium senegalense", "strain": "strain=JC43", "accession": "GCA_000285835.2", "taxid": 1033736, "species_taxid": 1033736, "relation_to_type": "type", "validated": true, "ani": 77.5835, "matched_fragments": 171, "total_fragments": 760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium linens", "strain": "strain=ATCC 9172", "accession": "GCA_900169165.1", "taxid": 1703, "species_taxid": 1703, "relation_to_type": "suspected-type", "validated": true, "ani": 77.4802, "matched_fragments": 184, "total_fragments": 760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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