{
    "type": "genome",
    "identifier": "GCF_001586255.1",
    "organism": "Zhongshania aliphaticivorans",
    "title": "Zhongshania aliphaticivorans",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Chung-Ang University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001586255.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04361929",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1470434",
        "species_taxid": "1470434",
        "organism_name": "Zhongshania aliphaticivorans",
        "infraspecific_name": "strain=SM-2",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/03/10",
        "asm_name": "ASM158625v1",
        "asm_submitter": "Chung-Ang University",
        "gbrs_paired_asm": "GCA_001586255.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/586/255/GCF_001586255.1_ASM158625v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4204359",
        "genome_size_ungapped": "4204359",
        "gc_percent": "50.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-03-03",
        "total_gene_count": "3759",
        "protein_coding_gene_count": "3692",
        "non_coding_gene_count": "56",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-03-10",
    "dateModified": "2016-03-10",
    "datePublished": "2016-03-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Zhongshania aliphaticivorans"
        ],
        "sample_taxid": [
            "1470434"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "South Korea: Dangjin"
        ],
        "sample_host_location_id": [],
        "data_size": "1.192 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4204359",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "4204359",
        "N50 (bp)": "4204359",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "50.7",
        "Number of CDSs": "3725",
        "Average Protein Length": "332.5",
        "Coding Ratio (%)": "88.4",
        "Number of rRNAs": "9",
        "Number of tRNAs": "43",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Zhongshania aliphaticivorans",
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                "accession": "GCA_001586255.1",
                "taxid": 1470434,
                "species_taxid": 1470434,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1400,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Zhongshania antarctica",
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                "accession": "GCA_014202945.1",
                "taxid": 641702,
                "species_taxid": 641702,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1064,
                "total_fragments": 1401,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Zhongshania antarctica",
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                "accession": "GCA_014898265.1",
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                "species_taxid": 641702,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Spongiibacter thalassae",
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                "species_taxid": 2721624,
                "relation_to_type": "type",
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                "total_fragments": 1401,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Spongiibacter tropicus",
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                "accession": "GCA_000420325.1",
                "taxid": 454602,
                "species_taxid": 454602,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5218,
                "matched_fragments": 148,
                "total_fragments": 1401,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Spongiibacter pelagi",
                "strain": "strain=KMU-158",
                "accession": "GCA_014705705.1",
                "taxid": 2760804,
                "species_taxid": 2760804,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4631,
                "matched_fragments": 171,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001586255.1",
                "gtdb_species": "s__Zhongshania aliphaticivorans",
                "ani": 100.0,
                "matched_fragments": 1399,
                "total_fragments": 1401,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Spongiibacteraceae;g__Zhongshania",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.39",
                "min_intra_species_ani": "99.39",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
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            {
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                "matched_fragments": 1064,
                "total_fragments": 1401,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Spongiibacteraceae;g__Zhongshania",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_902705875.1",
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                "matched_fragments": 276,
                "total_fragments": 1401,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Spongiibacteraceae;g__Marortus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
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                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCF_002915595.1",
                "gtdb_species": "s__Marortus luteolus",
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                "total_fragments": 1401,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Spongiibacteraceae;g__Marortus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.55",
                "min_intra_species_ani": "97.55",
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                "num_clustered_genomes": 2,
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Spongiibacteraceae;g__Marortus",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            },
            {
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            },
            {
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        ]
    },
    "_bac2feature": {
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        "mesophilic_range_tmp": null,
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    "_genome_taxon": [
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        "aliphaticivorans"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}