{ "type": "genome", "identifier": "GCF_001590905.1", "organism": "Serratia grimesii NBRC 13537", "title": "Serratia grimesii NBRC 13537", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001590905.1", "bioproject": "PRJNA224116", "biosample": "SAMD00046909", "wgs_master": "BCTT00000000.1", "refseq_category": "na", "taxid": "1218094", "species_taxid": "82995", "organism_name": "Serratia grimesii NBRC 13537", "infraspecific_name": "strain=NBRC 13537", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/02/23", "asm_name": "ASM159090v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_001590905.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/590/905/GCF_001590905.1_ASM159090v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5072299", "genome_size_ungapped": "5072299", "gc_percent": "53.000000", "replicon_count": "0", "scaffold_count": "40", "contig_count": "40", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001590905.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "4767", "protein_coding_gene_count": "4659", "non_coding_gene_count": "79", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-02-23", "dateModified": "2016-02-23", "datePublished": "2016-02-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Serratia grimesii NBRC 13537" ], "sample_taxid": [ "1218094" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.445 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5072299", "Number of Sequences": "40", "Longest Sequences (bp)": "594908", "N50 (bp)": "315719", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "52.8", "Number of CDSs": "4659", "Average Protein Length": "316.3", "Coding Ratio (%)": "87.1", "Number of rRNAs": "1", "Number of tRNAs": "64", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Serratia grimesii", "strain": "strain=NBRC 13537", "accession": "GCA_001590905.1", "taxid": 82995, "species_taxid": 82995, 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"matched_fragments": 1408, "total_fragments": 1672, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia liquefaciens", "strain": "strain=ATCC 27592", "accession": "GCA_000422085.1", "taxid": 614, "species_taxid": 614, "relation_to_type": "type", "validated": true, "ani": 86.6752, "matched_fragments": 1415, "total_fragments": 1672, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia inhibens", "strain": "strain=S40", "accession": "GCA_003591175.1", "taxid": 2338073, "species_taxid": 2338073, "relation_to_type": "type", "validated": true, "ani": 85.5615, "matched_fragments": 1285, "total_fragments": 1672, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia plymuthica", "strain": "strain=FDAARGOS_895", "accession": "GCA_016027675.1", "taxid": 82996, "species_taxid": 82996, "relation_to_type": "type", "validated": true, "ani": 85.3935, "matched_fragments": 1322, "total_fragments": 1672, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia entomophila", "strain": "strain=A1", "accession": "GCA_021462285.1", "taxid": 42906, "species_taxid": 42906, "relation_to_type": "type", "validated": true, "ani": 83.8171, "matched_fragments": 1191, "total_fragments": 1672, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia nevei", "strain": "strain=S15", "accession": "GCA_008364245.1", "taxid": 2703794, "species_taxid": 2703794, "relation_to_type": "type", "validated": true, "ani": 82.9958, "matched_fragments": 1129, "total_fragments": 1672, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia bockelmannii", "strain": "strain=S3", "accession": "GCA_008011855.1", "taxid": 2703793, "species_taxid": 2703793, "relation_to_type": "type", "validated": true, "ani": 82.881, "matched_fragments": 1117, "total_fragments": 1672, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rahnella bonaserana", "strain": "strain=H11b", "accession": "GCA_019049675.1", "taxid": 2816248, "species_taxid": 2816248, "relation_to_type": "type", "validated": true, "ani": 79.2839, "matched_fragments": 487, "total_fragments": 1672, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rahnella rivi", "strain": "strain=FC061912-K", "accession": "GCA_019049655.1", "taxid": 2816249, "species_taxid": 2816249, "relation_to_type": "type", "validated": true, "ani": 79.2298, "matched_fragments": 504, "total_fragments": 1672, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cronobacter sakazakii", "strain": "strain=ATCC 29544", "accession": "GCA_001971035.1", "taxid": 28141, "species_taxid": 28141, "relation_to_type": "type", "validated": true, "ani": 78.241, "matched_fragments": 347, "total_fragments": 1672, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { 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