{ "type": "genome", "identifier": "GCF_001590985.1", "organism": "Novosphingobium naphthalenivorans NBRC 102051", "title": "Novosphingobium naphthalenivorans NBRC 102051", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001590985.1", "bioproject": "PRJNA224116", "biosample": "SAMD00046703", "wgs_master": "BCTX00000000.1", "refseq_category": "reference genome", "taxid": "1219034", "species_taxid": "273168", "organism_name": "Novosphingobium naphthalenivorans NBRC 102051", "infraspecific_name": "strain=NBRC 102051", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/02/23", "asm_name": "ASM159098v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_001590985.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/590/985/GCF_001590985.1_ASM159098v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5236092", "genome_size_ungapped": "5236092", "gc_percent": "64.000000", "replicon_count": "0", "scaffold_count": "234", "contig_count": "234", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001590985.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "5120", "protein_coding_gene_count": "4976", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-02-23", "dateModified": "2016-02-23", "datePublished": "2016-02-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Novosphingobium naphthalenivorans NBRC 102051" ], "sample_taxid": [ "1219034" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.463 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5236092", "Number of Sequences": "234", "Longest Sequences (bp)": "186445", "N50 (bp)": "56888", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.8", "Number of CDSs": "4928", "Average Protein Length": "306.3", "Coding Ratio (%)": "86.5", "Number of rRNAs": "2", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Novosphingobium naphthalenivorans", "strain": "strain=NBRC 102051", "accession": "GCA_001590985.1", "taxid": 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"matched_fragments": 668, "total_fragments": 1637, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium profundi", "strain": "strain=F72", "accession": "GCA_018491765.1", "taxid": 1774954, "species_taxid": 1774954, "relation_to_type": "type", "validated": true, "ani": 80.9345, "matched_fragments": 685, "total_fragments": 1637, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium colocasiae", "strain": "strain=KCTC 32255", "accession": "GCA_014652555.1", "taxid": 1256513, "species_taxid": 1256513, "relation_to_type": "type", "validated": true, "ani": 80.803, "matched_fragments": 608, "total_fragments": 1637, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium silvae", "strain": "strain=FGD1", "accession": "GCA_009856825.1", "taxid": 2692619, "species_taxid": 2692619, "relation_to_type": "type", "validated": true, "ani": 80.6634, "matched_fragments": 637, "total_fragments": 1637, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium aquimarinum", "strain": "strain=M24A2M", "accession": "GCA_009746585.1", "taxid": 2682494, "species_taxid": 2682494, "relation_to_type": "type", "validated": true, "ani": 79.9204, "matched_fragments": 567, "total_fragments": 1637, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium huizhouense", "strain": "strain=c7", "accession": "GCA_020179475.1", "taxid": 2866625, "species_taxid": 2866625, "relation_to_type": "type", "validated": true, "ani": 79.8474, "matched_fragments": 507, "total_fragments": 1637, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium percolationis", "strain": "strain=c1", "accession": "GCA_020179425.1", "taxid": 2871811, "species_taxid": 2871811, "relation_to_type": "type", "validated": true, "ani": 79.8138, "matched_fragments": 511, "total_fragments": 1637, "ani_threshold": 95, "status": "below_threshold" 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