{
    "type": "genome",
    "identifier": "GCF_001591285.1",
    "organism": "Sphingobium cloacae NBRC 102517",
    "title": "Sphingobium cloacae NBRC 102517",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "National Institute of Technology and Evaluation",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001591285.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00046706",
        "wgs_master": "BCUM00000000.1",
        "refseq_category": "na",
        "taxid": "1223531",
        "species_taxid": "120107",
        "organism_name": "Sphingobium cloacae NBRC 102517",
        "infraspecific_name": "strain=NBRC 102517",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/02/23",
        "asm_name": "ASM159128v1",
        "asm_submitter": "National Institute of Technology and Evaluation",
        "gbrs_paired_asm": "GCA_001591285.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/591/285/GCF_001591285.1_ASM159128v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4290621",
        "genome_size_ungapped": "4290621",
        "gc_percent": "64.500000",
        "replicon_count": "0",
        "scaffold_count": "169",
        "contig_count": "169",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001591285.1-RS_2024_12_23",
        "annotation_date": "2024-12-23",
        "total_gene_count": "4354",
        "protein_coding_gene_count": "4199",
        "non_coding_gene_count": "52",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-02-23",
    "dateModified": "2016-02-23",
    "datePublished": "2016-02-23",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Sphingobium cloacae NBRC 102517"
        ],
        "sample_taxid": [
            "1223531"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.189 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4290621",
        "Number of Sequences": "169",
        "Longest Sequences (bp)": "206479",
        "N50 (bp)": "70601",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "64.6",
        "Number of CDSs": "4191",
        "Average Protein Length": "298.0",
        "Coding Ratio (%)": "87.3",
        "Number of rRNAs": "3",
        "Number of tRNAs": "49",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Sphingobium cloacae",
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                "species_taxid": 120107,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
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            },
            {
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                "ani_threshold": 95,
                "status": "conclusive"
            },
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                "status": "below_threshold"
            },
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
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                "organism_name": "Sphingobium wenxiniae",
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                "species_taxid": 595605,
                "relation_to_type": "type",
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                "ani": 87.6854,
                "matched_fragments": 746,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingobium wenxiniae",
                "strain": "strain=CGMCC 1.7748",
                "accession": "GCA_007830065.1",
                "taxid": 595605,
                "species_taxid": 595605,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 754,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas flavalba",
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                "accession": "GCA_004796535.1",
                "taxid": 2559804,
                "species_taxid": 2559804,
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                "matched_fragments": 353,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas cavernae",
                "strain": "strain=K2R01-6",
                "accession": "GCA_003590775.1",
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                "species_taxid": 2320861,
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            },
            {
                "organism_name": "Sphingomonas citri",
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                "accession": "GCA_019429485.1",
                "taxid": 2862499,
                "species_taxid": 2862499,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0692,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas morindae",
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                "relation_to_type": "type",
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                "ani": 78.0042,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingosinicella ginsenosidimutans",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
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        ],
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            "contamination": 0.0,
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                "accession": "GCF_002355855.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingobium",
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            {
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    },
    "_bac2feature": {
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    "_genome_taxon": [
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        "NBRC",
        "102517"
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}