{ "type": "genome", "identifier": "GCF_001591305.1", "organism": "Sphingobium amiense NBRC 102518", "title": "Sphingobium amiense NBRC 102518", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001591305.1", "bioproject": "PRJNA224116", "biosample": "SAMD00046707", "wgs_master": "BCUN00000000.1", "refseq_category": "na", "taxid": "1223534", "species_taxid": "135719", "organism_name": "Sphingobium amiense NBRC 102518", "infraspecific_name": "strain=NBRC 102518", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/02/23", "asm_name": "ASM159130v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_001591305.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/591/305/GCF_001591305.1_ASM159130v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4543760", "genome_size_ungapped": "4543760", "gc_percent": "64.500000", "replicon_count": "0", "scaffold_count": "130", "contig_count": "130", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001591305.1-RS_2024_08_12", "annotation_date": "2024-08-12", "total_gene_count": "4489", "protein_coding_gene_count": "4378", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-02-23", "dateModified": "2016-02-23", "datePublished": "2016-02-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Sphingobium amiense NBRC 102518" ], "sample_taxid": [ "1223534" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.256 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4543760", "Number of Sequences": "130", "Longest Sequences (bp)": "433982", "N50 (bp)": "103589", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.7", "Number of CDSs": "4316", "Average Protein Length": "311.8", "Coding Ratio (%)": "88.9", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sphingobium amiense", "strain": "strain=NBRC 102518", "accession": "GCA_001591305.1", "taxid": 135719, "species_taxid": 135719, 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"below_threshold" }, { "organism_name": "Sphingobium ummariense", "strain": "strain=RL-3", "accession": "GCA_000447205.1", "taxid": 420994, "species_taxid": 420994, "relation_to_type": "type", "validated": true, "ani": 82.7199, "matched_fragments": 706, "total_fragments": 1450, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium abikonense", "strain": "strain=NBRC 16140", "accession": "GCA_001598335.1", "taxid": 86193, "species_taxid": 86193, "relation_to_type": "type", "validated": true, "ani": 82.3819, "matched_fragments": 696, "total_fragments": 1450, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium terrigena", "strain": "strain=EO9", "accession": "GCA_003591655.1", "taxid": 2304063, "species_taxid": 2304063, "relation_to_type": "type", "validated": true, "ani": 82.225, "matched_fragments": 713, "total_fragments": 1450, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas cavernae", 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