{ "type": "genome", "identifier": "GCF_001591405.1", "organism": "Janibacter terrae NBRC 107853", "title": "Janibacter terrae NBRC 107853", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001591405.1", "bioproject": "PRJNA224116", "biosample": "SAMD00046504", "wgs_master": "BCUV00000000.1", "refseq_category": "na", "taxid": "1216972", "species_taxid": "103817", "organism_name": "Janibacter terrae NBRC 107853", "infraspecific_name": "strain=NBRC 107853", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/02/27", "asm_name": "ASM159140v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_001591405.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/591/405/GCF_001591405.1_ASM159140v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3576202", "genome_size_ungapped": "3576202", "gc_percent": "71.500000", "replicon_count": "0", "scaffold_count": "11", "contig_count": "11", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001591405.1-RS_2024_08_08", "annotation_date": "2024-08-08", "total_gene_count": "3588", "protein_coding_gene_count": "3496", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-02-27", "dateModified": "2016-02-27", "datePublished": "2016-02-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Janibacter terrae NBRC 107853" ], "sample_taxid": [ "1216972" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.945 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3576202", "Number of Sequences": "11", "Longest Sequences (bp)": "1372287", "N50 (bp)": "892834", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.7", "Number of CDSs": "3575", "Average Protein Length": "311.5", "Coding Ratio (%)": "93.4", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Janibacter terrae", "strain": "strain=NBRC 107853", "accession": "GCA_001591405.1", "taxid": 103817, "species_taxid": 103817, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1175, "total_fragments": 1186, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Janibacter indicus", "strain": "strain=CGMCC 1.12511", "accession": "GCA_900176385.1", "taxid": 857417, "species_taxid": 857417, "relation_to_type": "type", "validated": true, "ani": 86.6614, "matched_fragments": 854, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janibacter anophelis", "strain": "strain=NBRC 107843", "accession": "GCA_001570945.1", "taxid": 319054, "species_taxid": 319054, "relation_to_type": "type", "validated": true, "ani": 86.5339, "matched_fragments": 819, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janibacter hoylei", "strain": "strain=PVAS-1", "accession": "GCA_004025845.1", "taxid": 364298, "species_taxid": 364298, "relation_to_type": "type", "validated": true, "ani": 86.4687, "matched_fragments": 794, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janibacter hoylei", "strain": "strain=PVAS-1", "accession": "GCA_000297495.1", "taxid": 364298, "species_taxid": 364298, "relation_to_type": "type", "validated": true, "ani": 86.3865, "matched_fragments": 788, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janibacter limosus", "strain": "strain=NBRC 16128", "accession": "GCA_001570985.1", "taxid": 53458, "species_taxid": 53458, "relation_to_type": "type", "validated": true, "ani": 85.4251, "matched_fragments": 809, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janibacter cremeus", "strain": "strain=DSM 26154", "accession": "GCA_013409205.1", "taxid": 1285192, "species_taxid": 1285192, "relation_to_type": "type", "validated": true, "ani": 83.2256, "matched_fragments": 712, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janibacter corallicola", "strain": "strain=NBRC 107790", "accession": "GCA_001570965.1", "taxid": 415212, "species_taxid": 415212, "relation_to_type": "type", "validated": true, "ani": 82.7794, "matched_fragments": 640, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janibacter melonis", "strain": "strain=NBRC107855", "accession": "GCA_020567375.1", "taxid": 262209, "species_taxid": 262209, "relation_to_type": "type", "validated": true, "ani": 82.0853, "matched_fragments": 697, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janibacter endophyticus", "strain": "strain=YIM B02568", "accession": "GCA_016888335.1", "taxid": 2806261, "species_taxid": 2806261, "relation_to_type": "type", "validated": true, "ani": 81.9733, "matched_fragments": 633, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arsenicicoccus cauae", "strain": "strain=MKL-02", "accession": "GCA_009707125.1", "taxid": 2663847, "species_taxid": 2663847, "relation_to_type": "type", "validated": true, "ani": 78.8385, "matched_fragments": 417, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ornithinimicrobium sediminis", "strain": "strain=EGI L100131", "accession": "GCA_021272345.1", "taxid": 2904603, "species_taxid": 2904603, "relation_to_type": "type", "validated": true, "ani": 78.0363, "matched_fragments": 362, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ornithinimicrobium murale", "strain": "strain=DSM 22056", "accession": "GCA_003352835.1", "taxid": 1050153, "species_taxid": 1050153, "relation_to_type": "type", "validated": true, "ani": 77.5931, "matched_fragments": 240, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001591405.1", "gtdb_species": "s__Janibacter terrae", "ani": 100.0, "matched_fragments": 1177, "total_fragments": 1186, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Janibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.98", "min_intra_species_ani": "98.88", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.93", "num_clustered_genomes": 4, "status": "conclusive" }, { "accession": "GCF_900176385.1", "gtdb_species": "s__Janibacter indicus", "ani": 86.6615, "matched_fragments": 854, "total_fragments": 1186, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Janibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.60", "min_intra_species_ani": "97.16", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.88", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_001570945.1", "gtdb_species": "s__Janibacter anophelis", "ani": 86.5277, "matched_fragments": 819, "total_fragments": 1186, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Janibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.19", "min_intra_species_ani": "96.19", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000297495.1", "gtdb_species": "s__Janibacter hoylei", "ani": 86.4283, "matched_fragments": 786, "total_fragments": 1186, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Janibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.95", "min_intra_species_ani": "99.95", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004295485.1", "gtdb_species": "s__Janibacter limosus_A", "ani": 85.868, "matched_fragments": 874, "total_fragments": 1186, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Janibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001428305.1", "gtdb_species": "s__Janibacter sp001428305", "ani": 85.428, "matched_fragments": 862, "total_fragments": 1186, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Janibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001570985.1", 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83.224, "matched_fragments": 713, "total_fragments": 1186, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Janibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001570965.1", "gtdb_species": "s__Janibacter corallicola", "ani": 82.7912, "matched_fragments": 639, "total_fragments": 1186, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Janibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.171, "cell_length": -0.044, "doubling_h": null, "growth_tmp": 30.0, 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