{ "type": "genome", "identifier": "GCF_001591425.1", "organism": "Sutcliffiella cohnii NBRC 15565", "title": "Sutcliffiella cohnii NBRC 15565", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001591425.1", "bioproject": "PRJNA224116", "biosample": "SAMD00046992", "wgs_master": "BCUW00000000.1", "refseq_category": "na", "taxid": "1314751", "species_taxid": "33932", "organism_name": "Sutcliffiella cohnii NBRC 15565", "infraspecific_name": "strain=NBRC 15565", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/02/27", "asm_name": "ASM159142v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_001591425.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/591/425/GCF_001591425.1_ASM159142v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4897256", "genome_size_ungapped": "4897256", "gc_percent": "35.500000", "replicon_count": "0", "scaffold_count": "206", "contig_count": "206", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001591425.1-RS_2024_08_12", "annotation_date": "2024-08-12", "total_gene_count": "5043", "protein_coding_gene_count": "4944", "non_coding_gene_count": "44", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-02-27", "dateModified": "2016-02-27", "datePublished": "2016-02-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Sutcliffiella cohnii NBRC 15565" ], "sample_taxid": [ "1314751" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.387 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4897256", "Number of Sequences": "206", "Longest Sequences (bp)": "146489", "N50 (bp)": "39155", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "35.7", "Number of CDSs": "5019", "Average Protein Length": "276.8", "Coding Ratio (%)": "85.1", "Number of rRNAs": "1", "Number of tRNAs": "38", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sutcliffiella cohnii", "strain": "strain=NBRC 15565", "accession": "GCA_001591425.1", "taxid": 33932, "species_taxid": 33932, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1509, "total_fragments": 1528, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Sutcliffiella cohnii", "strain": "strain=DSM 6307", "accession": "GCA_002250055.1", "taxid": 33932, "species_taxid": 33932, "relation_to_type": "type", "validated": true, "ani": 99.9994, "matched_fragments": 1476, "total_fragments": 1528, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Sutcliffiella deserti", "strain": "strain=DG-18", "accession": "GCA_020037475.1", "taxid": 2875501, "species_taxid": 2875501, "relation_to_type": "type", "validated": true, "ani": 77.8551, "matched_fragments": 139, "total_fragments": 1528, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus alkalisoli", "strain": "strain=FJAT-45122", "accession": "GCA_002797415.1", "taxid": 2011008, "species_taxid": 2011008, "relation_to_type": "type", "validated": true, "ani": 77.7884, "matched_fragments": 281, "total_fragments": 1528, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sutcliffiella halmapala", "strain": "strain=DSM 8723", "accession": "GCA_002019665.1", "taxid": 79882, "species_taxid": 79882, "relation_to_type": "type", "validated": true, "ani": 77.7861, "matched_fragments": 222, "total_fragments": 1528, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metabacillus bambusae", "strain": "strain=BG109", "accession": "GCA_017497975.1", "taxid": 2795218, "species_taxid": 2795218, "relation_to_type": "type", "validated": true, "ani": 76.9725, "matched_fragments": 114, "total_fragments": 1528, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metabacillus iocasae", "strain": "strain=DSM 104297", "accession": "GCA_016909075.1", "taxid": 2291674, "species_taxid": 2291674, "relation_to_type": "type", "validated": true, "ani": 76.9396, "matched_fragments": 113, "total_fragments": 1528, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Priestia megaterium", "strain": "strain=NCTC10342", "accession": "GCA_900445485.1", "taxid": 1404, "species_taxid": 1404, "relation_to_type": "type", "validated": true, "ani": 76.9393, "matched_fragments": 97, "total_fragments": 1528, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Priestia megaterium", "strain": "strain=NBRC 15308", "accession": "GCA_001591525.1", "taxid": 1404, "species_taxid": 1404, "relation_to_type": "type", "validated": true, "ani": 76.9163, "matched_fragments": 91, "total_fragments": 1528, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Litchfieldia alkalitelluris", "strain": "strain=DSM 16976", "accession": "GCA_002019645.1", "taxid": 304268, "species_taxid": 304268, "relation_to_type": "type", "validated": true, "ani": 76.9066, "matched_fragments": 141, "total_fragments": 1528, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus aquiflavi", "strain": "strain=3H-10", "accession": "GCA_011008855.1", "taxid": 2672567, "species_taxid": 2672567, "relation_to_type": "type", "validated": true, "ani": 76.7228, "matched_fragments": 77, "total_fragments": 1528, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus marasmi", "strain": "strain=Marseille-P3556", "accession": "GCA_902168435.1", "taxid": 1926279, "species_taxid": 1926279, "relation_to_type": "type", "validated": true, "ani": 76.6729, "matched_fragments": 81, "total_fragments": 1528, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus clarus", "strain": "strain=BHP", "accession": "GCA_000746925.1", "taxid": 2338372, "species_taxid": 2338372, "relation_to_type": "type", "validated": true, "ani": 76.4542, "matched_fragments": 111, "total_fragments": 1528, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaerobacillus arseniciselenatis", "strain": "strain=DSM 15340", "accession": "GCA_001865995.1", "taxid": 85682, "species_taxid": 85682, "relation_to_type": "type", "validated": true, "ani": 76.4146, "matched_fragments": 64, "total_fragments": 1528, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus clarus", "strain": "strain=PS00077A", "accession": "GCA_003428195.1", "taxid": 2338372, "species_taxid": 2338372, "relation_to_type": "type", "validated": true, "ani": 76.4139, "matched_fragments": 107, "total_fragments": 1528, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Peribacillus alkalitolerans", "strain": "strain=KCTC 33631", "accession": "GCA_010882125.1", "taxid": 1550385, "species_taxid": 1550385, "relation_to_type": "type", "validated": true, "ani": 76.2431, "matched_fragments": 88, "total_fragments": 1528, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gracilibacillus suaedae", "strain": "strain=LD4P30", "accession": "GCA_017599345.1", "taxid": 2820273, "species_taxid": 2820273, "relation_to_type": "type", "validated": true, "ani": 75.6579, "matched_fragments": 53, "total_fragments": 1528, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002250055.1", "gtdb_species": "s__Sutcliffiella cohnii", "ani": 99.9994, "matched_fragments": 1476, "total_fragments": 1528, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_I;g__Sutcliffiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_002335755.1", "gtdb_species": "s__FJAT-45066 sp002335755", "ani": 77.8669, "matched_fragments": 276, "total_fragments": 1528, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_I;g__FJAT-45066", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.38", "min_intra_species_ani": "99.38", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002019665.1", "gtdb_species": "s__Sutcliffiella_A halmapala", "ani": 77.7861, "matched_fragments": 222, "total_fragments": 1528, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_I;g__Sutcliffiella_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001636495.1", "gtdb_species": "s__Sutcliffiella_A horikoshii_A", "ani": 77.506, "matched_fragments": 134, "total_fragments": 1528, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_I;g__Sutcliffiella_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009363695.1", "gtdb_species": "s__Sutcliffiella_A sp009363695", "ani": 77.2995, "matched_fragments": 158, "total_fragments": 1528, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_I;g__Sutcliffiella_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002157855.1", "gtdb_species": "s__Sutcliffiella_A horikoshii_C", "ani": 77.2425, "matched_fragments": 176, "total_fragments": 1528, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_I;g__Sutcliffiella_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.53", "min_intra_species_ani": "95.82", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.90", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_002734285.1", "gtdb_species": "s__Fredinandcohnia onubensis_A", "ani": 77.0404, "matched_fragments": 139, "total_fragments": 1528, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_L;g__Fredinandcohnia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000832985.1", "gtdb_species": "s__Priestia megaterium", "ani": 77.0061, "matched_fragments": 95, "total_fragments": 1528, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_H;g__Priestia", "ani_circumscription_radius": 95.5311, "mean_intra_species_ani": "96.82", "min_intra_species_ani": "95.69", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.73", "num_clustered_genomes": 151, "status": "-" }, { "accession": "GCF_017497975.1", "gtdb_species": "s__Metabacillus sp017497975", "ani": 76.953, "matched_fragments": 115, "total_fragments": 1528, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Metabacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016909075.1", "gtdb_species": "s__Priestia iocasae", "ani": 76.9396, "matched_fragments": 113, "total_fragments": 1528, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_H;g__Priestia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003184905.1", "gtdb_species": "s__Priestia sp003184905", "ani": 76.9313, "matched_fragments": 125, "total_fragments": 1528, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_H;g__Priestia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014217835.1", "gtdb_species": "s__Metabacillus litoralis_A", "ani": 76.9236, "matched_fragments": 121, "total_fragments": 1528, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Metabacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.81", "min_intra_species_ani": "99.81", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900156865.1", "gtdb_species": "s__Fredinandcohnia sinesaloumensis", "ani": 76.9145, "matched_fragments": 119, "total_fragments": 1528, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_L;g__Fredinandcohnia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002019595.1", "gtdb_species": "s__Bacillus_BA abyssalis", "ani": 76.9137, "matched_fragments": 77, "total_fragments": 1528, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_H;g__Bacillus_BA", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011008855.1", "gtdb_species": "s__Bacillus_BT aquiflavi", "ani": 76.7228, "matched_fragments": 77, "total_fragments": 1528, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Bacillus_BT", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_902168435.1", "gtdb_species": "s__Bacillus_BU marasmi", "ani": 76.6729, "matched_fragments": 81, "total_fragments": 1528, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Bacillus_BU", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008180335.1", "gtdb_species": "s__Priestia megaterium_B", "ani": 76.6386, "matched_fragments": 106, "total_fragments": 1528, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_H;g__Priestia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003944835.1", "gtdb_species": "s__HMF5848 sp003944835", "ani": 76.5981, "matched_fragments": 88, "total_fragments": 1528, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__HMF5848;g__HMF5848", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003667825.1", "gtdb_species": "s__Metabacillus litoralis_B", "ani": 76.4999, "matched_fragments": 120, "total_fragments": 1528, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Metabacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.61", "min_intra_species_ani": "98.61", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002746455.1", "gtdb_species": "s__Bacillus_A fungorum", "ani": 76.4576, "matched_fragments": 109, "total_fragments": 1528, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.51", "min_intra_species_ani": "97.51", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_018333075.1", "gtdb_species": "s__Heyndrickxia sporothermodurans_A", "ani": 76.3925, "matched_fragments": 101, "total_fragments": 1528, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__Heyndrickxia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014932895.1", "gtdb_species": "s__Bacillus_A thuringiensis_AA", "ani": 76.3036, "matched_fragments": 115, "total_fragments": 1528, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000712595.1", "gtdb_species": "s__Bacillus_A manliponensis", "ani": 76.2267, "matched_fragments": 119, "total_fragments": 1528, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002153425.1", "gtdb_species": "s__Evansella alkalicola", "ani": 75.9266, "matched_fragments": 61, "total_fragments": 1528, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_H;f__Salisediminibacteriaceae;g__Evansella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Sutcliffiella", "cohnii", "NBRC", "15565" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }