{
    "type": "genome",
    "identifier": "GCF_001591465.1",
    "organism": "Cytobacillus firmus NBRC 15306",
    "title": "Cytobacillus firmus NBRC 15306",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "National Institute of Technology and Evaluation",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001591465.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00046995",
        "wgs_master": "BCUY00000000.1",
        "refseq_category": "na",
        "taxid": "1314753",
        "species_taxid": "1399",
        "organism_name": "Cytobacillus firmus NBRC 15306",
        "infraspecific_name": "strain=NBRC 15306",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/02/27",
        "asm_name": "ASM159146v1",
        "asm_submitter": "National Institute of Technology and Evaluation",
        "gbrs_paired_asm": "GCA_001591465.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/591/465/GCF_001591465.1_ASM159146v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4421001",
        "genome_size_ungapped": "4421001",
        "gc_percent": "41.500000",
        "replicon_count": "0",
        "scaffold_count": "254",
        "contig_count": "254",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001591465.1-RS_2024_08_12",
        "annotation_date": "2024-08-12",
        "total_gene_count": "4600",
        "protein_coding_gene_count": "4387",
        "non_coding_gene_count": "35",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-02-27",
    "dateModified": "2016-02-27",
    "datePublished": "2016-02-27",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Cytobacillus firmus NBRC 15306"
        ],
        "sample_taxid": [
            "1314753"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.261 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4421001",
        "Number of Sequences": "254",
        "Longest Sequences (bp)": "137656",
        "N50 (bp)": "41205",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "41.7",
        "Number of CDSs": "4478",
        "Average Protein Length": "274.5",
        "Coding Ratio (%)": "83.4",
        "Number of rRNAs": "0",
        "Number of tRNAs": "27",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Cytobacillus firmus",
                "strain": "strain=NBRC 15306",
                "accession": "GCA_001591465.1",
                "taxid": 1399,
                "species_taxid": 1399,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1342,
                "total_fragments": 1348,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Cytobacillus firmus",
                "strain": "strain=NCTC10335",
                "accession": "GCA_900445365.1",
                "taxid": 1399,
                "species_taxid": 1399,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.9946,
                "matched_fragments": 1347,
                "total_fragments": 1348,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Cytobacillus horneckiae",
                "strain": "strain=1P01SC",
                "accession": "GCA_002835735.1",
                "taxid": 549687,
                "species_taxid": 549687,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2826,
                "matched_fragments": 202,
                "total_fragments": 1348,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cytobacillus solani",
                "strain": "strain=FJAT-18043",
                "accession": "GCA_001420595.1",
                "taxid": 1637975,
                "species_taxid": 1637975,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9521,
                "matched_fragments": 251,
                "total_fragments": 1348,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cytobacillus praedii",
                "strain": "strain=FJAT-25547",
                "accession": "GCA_001439605.1",
                "taxid": 1742358,
                "species_taxid": 1742358,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8767,
                "matched_fragments": 241,
                "total_fragments": 1348,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Robertmurraya massiliosenegalensis",
                "strain": "strain=JC6",
                "accession": "GCA_000311725.1",
                "taxid": 1287657,
                "species_taxid": 1287657,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6992,
                "matched_fragments": 129,
                "total_fragments": 1348,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mesobacillus jeotgali",
                "strain": "strain=DSM 18226",
                "accession": "GCA_002874535.1",
                "taxid": 129985,
                "species_taxid": 129985,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3634,
                "matched_fragments": 170,
                "total_fragments": 1348,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Neobacillus piezotolerans",
                "strain": "strain=YLB-04",
                "accession": "GCA_003362805.1",
                "taxid": 2259171,
                "species_taxid": 2259171,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2555,
                "matched_fragments": 94,
                "total_fragments": 1348,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Neobacillus cucumis",
                "strain": "strain=DSM 101566",
                "accession": "GCA_016908975.1",
                "taxid": 1740721,
                "species_taxid": 1740721,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2364,
                "matched_fragments": 131,
                "total_fragments": 1348,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mesobacillus campisalis",
                "strain": "strain=SA2-6",
                "accession": "GCA_000986785.1",
                "taxid": 1408103,
                "species_taxid": 1408103,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1881,
                "matched_fragments": 150,
                "total_fragments": 1348,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus dakarensis",
                "strain": "strain=Marseille-P3515",
                "accession": "GCA_900156875.1",
                "taxid": 1926278,
                "species_taxid": 1926278,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0976,
                "matched_fragments": 161,
                "total_fragments": 1348,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Metabacillus idriensis",
                "strain": "strain=DSM-19097",
                "accession": "GCA_904423875.1",
                "taxid": 324768,
                "species_taxid": 324768,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9399,
                "matched_fragments": 109,
                "total_fragments": 1348,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Neobacillus mesonae",
                "strain": "strain=FJAT-13985",
                "accession": "GCA_001636315.1",
                "taxid": 1193713,
                "species_taxid": 1193713,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9199,
                "matched_fragments": 143,
                "total_fragments": 1348,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Robertmurraya siralis",
                "strain": "strain=171544",
                "accession": "GCA_005502275.1",
                "taxid": 77777,
                "species_taxid": 77777,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9169,
                "matched_fragments": 123,
                "total_fragments": 1348,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Neobacillus soli",
                "strain": "strain=NBRC 102451",
                "accession": "GCA_001591665.1",
                "taxid": 220688,
                "species_taxid": 220688,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8594,
                "matched_fragments": 137,
                "total_fragments": 1348,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Neobacillus soli",
                "strain": "strain=DSM 15604",
                "accession": "GCA_002335815.1",
                "taxid": 220688,
                "species_taxid": 220688,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8502,
                "matched_fragments": 142,
                "total_fragments": 1348,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Metabacillus idriensis",
                "strain": "strain=DSM 19097",
                "accession": "GCA_009674765.1",
                "taxid": 324768,
                "species_taxid": 324768,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8427,
                "matched_fragments": 107,
                "total_fragments": 1348,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus subtilis subsp. subtilis",
                "strain": "strain=168",
                "accession": "GCA_024917115.1",
                "taxid": 135461,
                "species_taxid": 1423,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4647,
                "matched_fragments": 63,
                "total_fragments": 1348,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus tequilensis",
                "strain": "strain=NCTC13306",
                "accession": "GCA_900445435.1",
                "taxid": 227866,
                "species_taxid": 227866,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2667,
                "matched_fragments": 61,
                "total_fragments": 1348,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lederbergia wuyishanensis",
                "strain": "strain=CGMCC 1.12709",
                "accession": "GCA_022900255.1",
                "taxid": 1347903,
                "species_taxid": 1347903,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2355,
                "matched_fragments": 52,
                "total_fragments": 1348,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Metabacillus dongyingensis",
                "strain": "strain=BY2G20",
                "accession": "GCA_019933155.2",
                "taxid": 2874282,
                "species_taxid": 2874282,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1739,
                "matched_fragments": 121,
                "total_fragments": 1348,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001591465.1",
                "gtdb_species": "s__Cytobacillus firmus",
                "ani": 100.0,
                "matched_fragments": 1342,
                "total_fragments": 1348,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Cytobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.21",
                "min_intra_species_ani": "98.02",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 11,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001038755.1",
                "gtdb_species": "s__Cytobacillus firmus_B",
                "ani": 94.3563,
                "matched_fragments": 1081,
                "total_fragments": 1348,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Cytobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.85",
                "min_intra_species_ani": "96.97",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_000565285.1",
                "gtdb_species": "s__Cytobacillus firmus_A",
                "ani": 94.2845,
                "matched_fragments": 1153,
                "total_fragments": 1348,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Cytobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001956215.1",
                "gtdb_species": "s__Cytobacillus sp001956215",
                "ani": 93.7659,
                "matched_fragments": 1166,
                "total_fragments": 1348,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Cytobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002272225.1",
                "gtdb_species": "s__Cytobacillus sp002272225",
                "ani": 92.8441,
                "matched_fragments": 1041,
                "total_fragments": 1348,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Cytobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009849585.1",
                "gtdb_species": "s__Cytobacillus sp009849585",
                "ani": 90.0862,
                "matched_fragments": 1120,
                "total_fragments": 1348,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Cytobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000294775.2",
                "gtdb_species": "s__Cytobacillus oceanisediminis_B",
                "ani": 89.2723,
                "matched_fragments": 1144,
                "total_fragments": 1348,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Cytobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.75",
                "min_intra_species_ani": "98.26",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 6,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Cytobacillus",
        "firmus",
        "NBRC",
        "15306"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}