{
    "type": "genome",
    "identifier": "GCF_001591685.1",
    "organism": "Ligilactobacillus murinus DSM 20452 = NBRC 14221",
    "title": "Ligilactobacillus murinus DSM 20452 = NBRC 14221",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "National Institute of Technology and Evaluation",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001591685.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00046917",
        "wgs_master": "BCVJ00000000.1",
        "refseq_category": "na",
        "taxid": "1423772",
        "species_taxid": "1622",
        "organism_name": "Ligilactobacillus murinus DSM 20452 = NBRC 14221",
        "infraspecific_name": "strain=NBRC 14221",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/02/27",
        "asm_name": "ASM159168v1",
        "asm_submitter": "National Institute of Technology and Evaluation",
        "gbrs_paired_asm": "GCA_001591685.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/591/685/GCF_001591685.1_ASM159168v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2123176",
        "genome_size_ungapped": "2123176",
        "gc_percent": "40.000000",
        "replicon_count": "0",
        "scaffold_count": "139",
        "contig_count": "139",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001591685.1-RS_2024_08_12",
        "annotation_date": "2024-08-12",
        "total_gene_count": "2084",
        "protein_coding_gene_count": "1997",
        "non_coding_gene_count": "34",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-02-27",
    "dateModified": "2016-02-27",
    "datePublished": "2016-02-27",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Ligilactobacillus murinus DSM 20452 = NBRC 14221"
        ],
        "sample_taxid": [
            "1423772"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.603 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2123176",
        "Number of Sequences": "139",
        "Longest Sequences (bp)": "181200",
        "N50 (bp)": "35208",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "40.0",
        "Number of CDSs": "2003",
        "Average Protein Length": "298.3",
        "Coding Ratio (%)": "84.4",
        "Number of rRNAs": "3",
        "Number of tRNAs": "28",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Ligilactobacillus murinus",
                "strain": "strain=NBRC 14221",
                "accession": "GCA_001591685.1",
                "taxid": 1622,
                "species_taxid": 1622,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 640,
                "total_fragments": 641,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Ligilactobacillus murinus",
                "strain": "strain=DSM 20452",
                "accession": "GCA_001436015.1",
                "taxid": 1622,
                "species_taxid": 1622,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9952,
                "matched_fragments": 638,
                "total_fragments": 641,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Ligilactobacillus animalis",
                "strain": "strain=DSM 20602",
                "accession": "GCA_001434535.1",
                "taxid": 1605,
                "species_taxid": 1605,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.8151,
                "matched_fragments": 499,
                "total_fragments": 641,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ligilactobacillus animalis",
                "strain": "strain=KCTC 3501",
                "accession": "GCA_000183825.1",
                "taxid": 1605,
                "species_taxid": 1605,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.7964,
                "matched_fragments": 503,
                "total_fragments": 641,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ligilactobacillus apodemi",
                "strain": "strain=DSM 16634",
                "accession": "GCA_001434405.1",
                "taxid": 307126,
                "species_taxid": 307126,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.1966,
                "matched_fragments": 307,
                "total_fragments": 641,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ligilactobacillus ceti",
                "strain": "strain=DSM 22408",
                "accession": "GCA_000423245.1",
                "taxid": 395085,
                "species_taxid": 395085,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3146,
                "matched_fragments": 54,
                "total_fragments": 641,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001591685.1",
                "gtdb_species": "s__Ligilactobacillus murinus",
                "ani": 100.0,
                "matched_fragments": 640,
                "total_fragments": 641,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Ligilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.01",
                "min_intra_species_ani": "96.68",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 62,
                "status": "conclusive"
            },
            {
                "accession": "GCA_910587695.1",
                "gtdb_species": "s__Ligilactobacillus sp910587695",
                "ani": 92.3146,
                "matched_fragments": 519,
                "total_fragments": 641,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Ligilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001434535.1",
                "gtdb_species": "s__Ligilactobacillus animalis",
                "ani": 91.8151,
                "matched_fragments": 499,
                "total_fragments": 641,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Ligilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.99",
                "min_intra_species_ani": "95.79",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 12,
                "status": "-"
            },
            {
                "accession": "GCF_001434405.1",
                "gtdb_species": "s__Ligilactobacillus apodemi",
                "ani": 81.1969,
                "matched_fragments": 307,
                "total_fragments": 641,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Ligilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.97",
                "min_intra_species_ani": "99.97",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900110005.1",
                "gtdb_species": "s__Ligilactobacillus ruminis_A",
                "ani": 78.4382,
                "matched_fragments": 88,
                "total_fragments": 641,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Ligilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.72",
                "min_intra_species_ani": "99.72",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000423245.1",
                "gtdb_species": "s__Ligilactobacillus ceti",
                "ani": 78.3146,
                "matched_fragments": 54,
                "total_fragments": 641,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Ligilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Ligilactobacillus",
        "murinus",
        "DSM",
        "20452",
        "=",
        "NBRC",
        "14221"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}