{
    "type": "genome",
    "identifier": "GCF_001591965.1",
    "organism": "Lysinibacillus odysseyi 34hs-1 = NBRC 100172",
    "title": "Lysinibacillus odysseyi 34hs-1 = NBRC 100172",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "National Institute of Technology and Evaluation",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001591965.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00046987",
        "wgs_master": "BCVX00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1220589",
        "species_taxid": "202611",
        "organism_name": "Lysinibacillus odysseyi 34hs-1 = NBRC 100172",
        "infraspecific_name": "strain=NBRC 100172",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/02/27",
        "asm_name": "ASM159196v1",
        "asm_submitter": "National Institute of Technology and Evaluation",
        "gbrs_paired_asm": "GCA_001591965.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/591/965/GCF_001591965.1_ASM159196v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4523637",
        "genome_size_ungapped": "4523637",
        "gc_percent": "41.000000",
        "replicon_count": "0",
        "scaffold_count": "34",
        "contig_count": "34",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001591965.1-RS_2024_12_09",
        "annotation_date": "2024-12-09",
        "total_gene_count": "4601",
        "protein_coding_gene_count": "4476",
        "non_coding_gene_count": "80",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-02-27",
    "dateModified": "2016-02-27",
    "datePublished": "2016-02-27",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Lysinibacillus odysseyi 34hs-1 = NBRC 100172"
        ],
        "sample_taxid": [
            "1220589"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.287 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4523637",
        "Number of Sequences": "34",
        "Longest Sequences (bp)": "528343",
        "N50 (bp)": "287817",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "41.0",
        "Number of CDSs": "4548",
        "Average Protein Length": "275.3",
        "Coding Ratio (%)": "83.0",
        "Number of rRNAs": "2",
        "Number of tRNAs": "68",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Lysinibacillus odysseyi",
                "strain": "strain=NBRC 100172",
                "accession": "GCA_001591965.1",
                "taxid": 202611,
                "species_taxid": 202611,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1488,
                "total_fragments": 1491,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lysinibacillus odysseyi",
                "strain": "strain=NBRC 100172",
                "accession": "GCA_002200835.1",
                "taxid": 202611,
                "species_taxid": 202611,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.988,
                "matched_fragments": 1473,
                "total_fragments": 1491,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lysinibacillus odysseyi",
                "strain": "strain=NBRC 100172",
                "accession": "GCA_000773015.1",
                "taxid": 202611,
                "species_taxid": 202611,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.988,
                "matched_fragments": 1473,
                "total_fragments": 1491,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lysinibacillus mangiferihumi",
                "strain": "strain=CCTCC AB 2010389",
                "accession": "GCA_005217845.1",
                "taxid": 1130819,
                "species_taxid": 1130819,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8433,
                "matched_fragments": 218,
                "total_fragments": 1491,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysinibacillus mangiferihumi",
                "strain": "strain=M-GX18",
                "accession": "GCA_003049665.1",
                "taxid": 1130819,
                "species_taxid": 1130819,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7289,
                "matched_fragments": 218,
                "total_fragments": 1491,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysinibacillus fusiformis",
                "strain": "strain=NBRC 15717",
                "accession": "GCA_006540205.1",
                "taxid": 28031,
                "species_taxid": 28031,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4907,
                "matched_fragments": 194,
                "total_fragments": 1491,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Solibacillus kalamii",
                "strain": "strain=ISSFR-015",
                "accession": "GCA_002174535.1",
                "taxid": 1748298,
                "species_taxid": 1748298,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4451,
                "matched_fragments": 251,
                "total_fragments": 1491,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysinibacillus fusiformis",
                "strain": "strain=ATCC 7055",
                "accession": "GCA_003049525.1",
                "taxid": 28031,
                "species_taxid": 28031,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4442,
                "matched_fragments": 200,
                "total_fragments": 1491,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Solibacillus kalamii",
                "strain": "strain=DSM 101595",
                "accession": "GCA_016909025.1",
                "taxid": 1748298,
                "species_taxid": 1748298,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.415,
                "matched_fragments": 256,
                "total_fragments": 1491,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysinibacillus composti",
                "strain": "strain=MCCC 1A13240",
                "accession": "GCA_003856865.1",
                "taxid": 720633,
                "species_taxid": 720633,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4015,
                "matched_fragments": 171,
                "total_fragments": 1491,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysinibacillus composti",
                "strain": "strain=DSM 24785",
                "accession": "GCA_016908465.1",
                "taxid": 720633,
                "species_taxid": 720633,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3674,
                "matched_fragments": 171,
                "total_fragments": 1491,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ureibacillus chungkukjangi",
                "strain": "strain=2RL32",
                "accession": "GCA_003049615.1",
                "taxid": 1202712,
                "species_taxid": 1202712,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2516,
                "matched_fragments": 179,
                "total_fragments": 1491,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysinibacillus sphaericus",
                "strain": "strain=NCTC10338",
                "accession": "GCA_900445465.1",
                "taxid": 1421,
                "species_taxid": 1421,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.2219,
                "matched_fragments": 212,
                "total_fragments": 1491,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysinibacillus sphaericus",
                "strain": "strain=NBRC 15095",
                "accession": "GCA_006539805.1",
                "taxid": 1421,
                "species_taxid": 1421,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.2215,
                "matched_fragments": 209,
                "total_fragments": 1491,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ureibacillus massiliensis",
                "strain": "strain=CCUG 49529",
                "accession": "GCA_000772965.1",
                "taxid": 292806,
                "species_taxid": 292806,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1498,
                "matched_fragments": 148,
                "total_fragments": 1491,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ureibacillus massiliensis",
                "strain": "strain=4400831",
                "accession": "GCA_002200855.1",
                "taxid": 292806,
                "species_taxid": 292806,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1458,
                "matched_fragments": 147,
                "total_fragments": 1491,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001591965.1",
                "gtdb_species": "s__Lysinibacillus_B odysseyi",
                "ani": 100.0,
                "matched_fragments": 1488,
                "total_fragments": 1491,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.67",
                "min_intra_species_ani": "99.01",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 4,
                "status": "conclusive"
            },
            {
                "accession": "GCA_002359075.1",
                "gtdb_species": "s__Lysinibacillus_B sp002359075",
                "ani": 86.0225,
                "matched_fragments": 681,
                "total_fragments": 1491,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014595895.1",
                "gtdb_species": "s__Lysinibacillus_B odysseyi_A",
                "ani": 78.7359,
                "matched_fragments": 299,
                "total_fragments": 1491,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003049665.1",
                "gtdb_species": "s__Lysinibacillus mangiferihumi",
                "ani": 78.7282,
                "matched_fragments": 218,
                "total_fragments": 1491,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus",
                "ani_circumscription_radius": 96.9114,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000772935.1",
                "gtdb_species": "s__Lysinibacillus boronitolerans",
                "ani": 78.6215,
                "matched_fragments": 190,
                "total_fragments": 1491,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus",
                "ani_circumscription_radius": 95.1183,
                "mean_intra_species_ani": "99.49",
                "min_intra_species_ani": "98.68",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_001275675.1",
                "gtdb_species": "s__Lysinibacillus sp001275675",
                "ani": 78.5991,
                "matched_fragments": 190,
                "total_fragments": 1491,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000612805.1",
                "gtdb_species": "s__Metasolibacillus ndiopicus",
                "ani": 78.5932,
                "matched_fragments": 212,
                "total_fragments": 1491,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Metasolibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003049505.1",
                "gtdb_species": "s__Metasolibacillus meyeri",
                "ani": 78.4705,
                "matched_fragments": 194,
                "total_fragments": 1491,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Metasolibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003049525.1",
                "gtdb_species": "s__Lysinibacillus fusiformis",
                "ani": 78.4363,
                "matched_fragments": 201,
                "total_fragments": 1491,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.17",
                "min_intra_species_ani": "95.55",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 32,
                "status": "-"
            },
            {
                "accession": "GCF_014836905.1",
                "gtdb_species": "s__Solibacillus sp014836905",
                "ani": 78.3791,
                "matched_fragments": 245,
                "total_fragments": 1491,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Solibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003049645.1",
                "gtdb_species": "s__Metasolibacillus fluoroglycofenilyticus",
                "ani": 78.3717,
                "matched_fragments": 185,
                "total_fragments": 1491,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Metasolibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.96",
                "min_intra_species_ani": "98.96",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_016908465.1",
                "gtdb_species": "s__Ureibacillus composti",
                "ani": 78.3638,
                "matched_fragments": 170,
                "total_fragments": 1491,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Ureibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002982115.1",
                "gtdb_species": "s__Lysinibacillus sphaericus",
                "ani": 78.2772,
                "matched_fragments": 210,
                "total_fragments": 1491,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus",
                "ani_circumscription_radius": 96.9114,
                "mean_intra_species_ani": "99.42",
                "min_intra_species_ani": "98.91",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 10,
                "status": "-"
            },
            {
                "accession": "GCF_001728805.1",
                "gtdb_species": "s__Lysinibacillus sphaericus_D",
                "ani": 78.2416,
                "matched_fragments": 199,
                "total_fragments": 1491,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus",
                "ani_circumscription_radius": 96.1498,
                "mean_intra_species_ani": "99.28",
                "min_intra_species_ani": "99.28",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_015999545.1",
                "gtdb_species": "s__Lysinibacillus sp002340205",
                "ani": 78.0843,
                "matched_fragments": 209,
                "total_fragments": 1491,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.79",
                "min_intra_species_ani": "97.71",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_002973635.1",
                "gtdb_species": "s__Lysinibacillus sp002973635",
                "ani": 78.0531,
                "matched_fragments": 177,
                "total_fragments": 1491,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001281525.1",
                "gtdb_species": "s__Lysinibacillus macroides",
                "ani": 77.9714,
                "matched_fragments": 184,
                "total_fragments": 1491,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.95",
                "min_intra_species_ani": "99.95",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017577605.1",
                "gtdb_species": "s__Ureibacillus sp017577605",
                "ani": 77.1223,
                "matched_fragments": 85,
                "total_fragments": 1491,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Ureibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.0,
        "cell_length": 0.602,
        "doubling_h": null,
        "growth_tmp": 30.0,
        "optimum_tmp": 32.5,
        "optimum_ph": 7.0,
        "genome_size": 4523333.5,
        "gc_content": 40.96,
        "coding_genes": 4438.19,
        "rRNA16S_genes": 11.166,
        "tRNA_genes": 100.944,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 1.0,
        "range_salinity": 0.5,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Lysinibacillus",
        "odysseyi",
        "34hs-1",
        "=",
        "NBRC",
        "100172"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}