{ "type": "genome", "identifier": "GCF_001592285.1", "organism": "Hydrogenophaga pseudoflava NBRC 102511", "title": "Hydrogenophaga pseudoflava NBRC 102511", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001592285.1", "bioproject": "PRJNA224116", "biosample": "SAMD00047221", "wgs_master": "BCWQ00000000.1", "refseq_category": "na", "taxid": "1349792", "species_taxid": "47421", "organism_name": "Hydrogenophaga pseudoflava NBRC 102511", "infraspecific_name": "strain=NBRC 102511", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/03/04", "asm_name": "ASM159228v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_001592285.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/592/285/GCF_001592285.1_ASM159228v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4500791", "genome_size_ungapped": "4500791", "gc_percent": "67.500000", "replicon_count": "0", "scaffold_count": "43", "contig_count": "43", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001592285.1-RS_2024_08_26", "annotation_date": "2024-08-26", "total_gene_count": "4339", "protein_coding_gene_count": "4257", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-03-04", "dateModified": "2016-03-04", "datePublished": "2016-03-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Hydrogenophaga pseudoflava NBRC 102511" ], "sample_taxid": [ "1349792" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany:Gottingen" ], "sample_host_location_id": [], "data_size": "1.227 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4500791", "Number of Sequences": "43", "Longest Sequences (bp)": "595552", "N50 (bp)": "231780", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.3", "Number of CDSs": "4260", "Average Protein Length": "327.4", "Coding Ratio (%)": "93.0", "Number of rRNAs": "3", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Hydrogenophaga pseudoflava", "strain": "strain=NBRC 102511", "accession": "GCA_001592285.1", "taxid": 47421, "species_taxid": 47421, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1474, "total_fragments": 1477, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Hydrogenophaga flava", "strain": "strain=NBRC 102514", "accession": "GCA_001571145.1", "taxid": 65657, "species_taxid": 65657, "relation_to_type": "type", "validated": true, "ani": 93.37, "matched_fragments": 1258, "total_fragments": 1477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga aromaticivorans", "strain": "strain=D2P1", "accession": "GCA_013387465.1", "taxid": 2610898, "species_taxid": 2610898, "relation_to_type": "type", "validated": true, "ani": 84.5786, "matched_fragments": 1050, "total_fragments": 1477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga taeniospiralis", "strain": "strain=NBRC 102512", "accession": "GCA_001592305.1", "taxid": 65656, "species_taxid": 65656, "relation_to_type": "type", "validated": 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