{ "type": "genome", "identifier": "GCF_001592305.1", "organism": "Hydrogenophaga taeniospiralis CCUG 15921", "title": "Hydrogenophaga taeniospiralis CCUG 15921", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001592305.1", "bioproject": "PRJNA224116", "biosample": "SAMD00047222", "wgs_master": "BCWR00000000.1", "refseq_category": "reference genome", "taxid": "1281780", "species_taxid": "65656", "organism_name": "Hydrogenophaga taeniospiralis CCUG 15921", "infraspecific_name": "strain=NBRC 102512", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/03/04", "asm_name": "ASM159230v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_001592305.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/592/305/GCF_001592305.1_ASM159230v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5275331", "genome_size_ungapped": "5275331", "gc_percent": "66.500000", "replicon_count": "0", "scaffold_count": "53", "contig_count": "53", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001592305.1-RS_2024_12_16", "annotation_date": "2024-12-16", "total_gene_count": "5024", "protein_coding_gene_count": "4934", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-03-04", "dateModified": "2016-03-04", "datePublished": "2016-03-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Hydrogenophaga taeniospiralis CCUG 15921" ], "sample_taxid": [ "1281780" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain" ], "sample_host_location_id": [], "data_size": "1.445 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5275331", "Number of Sequences": "53", "Longest Sequences (bp)": "694182", "N50 (bp)": "268203", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.7", "Number of CDSs": "4932", "Average Protein Length": "324.1", "Coding Ratio (%)": "90.9", "Number of rRNAs": "3", "Number of tRNAs": "55", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Hydrogenophaga taeniospiralis", "strain": "strain=NBRC 102512", "accession": "GCA_001592305.1", "taxid": 65656, "species_taxid": 65656, 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"below_threshold" }, { "organism_name": "Ramlibacter pinisoli", "strain": "strain=MAH-25", "accession": "GCA_009758015.1", "taxid": 2682844, "species_taxid": 2682844, "relation_to_type": "type", "validated": true, "ani": 79.7907, "matched_fragments": 663, "total_fragments": 1737, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter agri", "strain": "strain=G-1-2-2", "accession": "GCA_012927085.1", "taxid": 2728837, "species_taxid": 2728837, "relation_to_type": "type", "validated": true, "ani": 79.7287, "matched_fragments": 693, "total_fragments": 1737, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limnohabitans radicicola", "strain": "strain=JUR4", "accession": "GCA_014837235.1", "taxid": 2771427, "species_taxid": 2771427, "relation_to_type": "type", "validated": true, "ani": 79.488, "matched_fragments": 492, "total_fragments": 1737, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, 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