{ "type": "genome", "identifier": "GCF_001592365.1", "organism": "Gordonia hydrophobica NBRC 16057", "title": "Gordonia hydrophobica NBRC 16057", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001592365.1", "bioproject": "PRJNA224116", "biosample": "SAMD00047212", "wgs_master": "BCWU00000000.1", "refseq_category": "na", "taxid": "1223541", "species_taxid": "40516", "organism_name": "Gordonia hydrophobica NBRC 16057", "infraspecific_name": "strain=NBRC 16057", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/03/04", "asm_name": "ASM159236v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_001592365.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/592/365/GCF_001592365.1_ASM159236v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4579443", "genome_size_ungapped": "4579443", "gc_percent": "67.500000", "replicon_count": "0", "scaffold_count": "45", "contig_count": "45", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001592365.1-RS_2024_08_12", "annotation_date": "2024-08-12", "total_gene_count": "4277", "protein_coding_gene_count": "4162", "non_coding_gene_count": "64", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-03-04", "dateModified": "2016-03-04", "datePublished": "2016-03-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Gordonia hydrophobica NBRC 16057" ], "sample_taxid": [ "1223541" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.247 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.38, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4579443", "Number of Sequences": "45", "Longest Sequences (bp)": "781114", "N50 (bp)": "318719", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.5", "Number of CDSs": "4225", "Average Protein Length": "325.5", "Coding Ratio (%)": "90.1", "Number of rRNAs": "4", "Number of tRNAs": "58", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gordonia hydrophobica", "strain": "strain=NBRC 16057", "accession": "GCA_001592365.1", "taxid": 40516, "species_taxid": 40516, 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1506, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009932475.1", "gtdb_species": "s__Gordonia spumicola", "ani": 80.2655, "matched_fragments": 753, "total_fragments": 1506, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014197435.1", "gtdb_species": "s__Gordonia humi", "ani": 80.0892, "matched_fragments": 800, "total_fragments": 1506, "gtdb_taxonomy": 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