{
    "type": "genome",
    "identifier": "GCF_001593005.1",
    "organism": "Roseivirga ehrenbergii",
    "title": "Roseivirga ehrenbergii",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "FACULTY OF BIOSCIENCES AND MEDICAL ENGINEERING, UNIVERSITI TEKNOLOGI MALAYSIA",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001593005.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN03084331",
        "wgs_master": "LQZQ00000000.1",
        "refseq_category": "na",
        "taxid": "279360",
        "species_taxid": "279360",
        "organism_name": "Roseivirga ehrenbergii",
        "infraspecific_name": "strain=KMM 6017",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/03/16",
        "asm_name": "ASM159300v1",
        "asm_submitter": "FACULTY OF BIOSCIENCES AND MEDICAL ENGINEERING, UNIVERSITI TEKNOLOGI MALAYSIA",
        "gbrs_paired_asm": "GCA_001593005.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/593/005/GCF_001593005.1_ASM159300v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4243716",
        "genome_size_ungapped": "4243716",
        "gc_percent": "39.500000",
        "replicon_count": "0",
        "scaffold_count": "52",
        "contig_count": "52",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001593005.1-RS_2024_09_25",
        "annotation_date": "2024-09-25",
        "total_gene_count": "3743",
        "protein_coding_gene_count": "3682",
        "non_coding_gene_count": "44",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-03-16",
    "dateModified": "2016-03-16",
    "datePublished": "2016-03-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Roseivirga ehrenbergii"
        ],
        "sample_taxid": [
            "279360"
        ],
        "sample_host_organism": [
            "Ulva fenestrata"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan: Pallada Bay, Gulf of Peter the Great, Sea of Japan"
        ],
        "sample_host_location_id": [],
        "data_size": "1.204 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4243716",
        "Number of Sequences": "52",
        "Longest Sequences (bp)": "947437",
        "N50 (bp)": "415057",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "39.3",
        "Number of CDSs": "3637",
        "Average Protein Length": "345.1",
        "Coding Ratio (%)": "88.7",
        "Number of rRNAs": "3",
        "Number of tRNAs": "36",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Roseivirga ehrenbergii",
                "strain": "strain=KMM 6017",
                "accession": "GCA_001593005.1",
                "taxid": 279360,
                "species_taxid": 279360,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
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                "total_fragments": 1401,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Roseivirga ehrenbergii",
                "strain": "strain=DSM 102268",
                "accession": "GCA_004340805.1",
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                "species_taxid": 279360,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.997,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Roseivirga seohaensis subsp. aquiponti",
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                "accession": "GCA_001267955.1",
                "taxid": 1566026,
                "species_taxid": 1914963,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseivirga seohaensis",
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                "taxid": 1914963,
                "species_taxid": 1914963,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.0262,
                "matched_fragments": 1181,
                "total_fragments": 1401,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseivirga echinicomitans",
                "strain": "strain=KMM 6058",
                "accession": "GCA_001592935.1",
                "taxid": 296218,
                "species_taxid": 296218,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.0209,
                "matched_fragments": 1050,
                "total_fragments": 1401,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001593005.1",
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                "matched_fragments": 1399,
                "total_fragments": 1401,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Roseivirga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
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                "mean_intra_species_ani": "97.29",
                "min_intra_species_ani": "97.29",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
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                "accession": "GCA_002786855.1",
                "gtdb_species": "s__Roseivirga sp002786855",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Roseivirga",
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                "mean_intra_species_ani": "99.94",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001592965.1",
                "gtdb_species": "s__Fabibacter spongicola",
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            {
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        ]
    },
    "_bac2feature": {
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        "cell_length": 0.322,
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        "optimum_tmp": 23.5,
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        "bacillus_cell_shape": 1.0,
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    "_genome_taxon": [
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        "ehrenbergii"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}