{ "type": "genome", "identifier": "GCF_001593385.1", "organism": "Chryseobacterium cucumeris", "title": "Chryseobacterium cucumeris", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001593385.1", "bioproject": "PRJNA224116", "biosample": "SAMN04544318", "wgs_master": "LUVZ00000000.1", "refseq_category": "na", "taxid": "1813611", "species_taxid": "1813611", "organism_name": "Chryseobacterium cucumeris", "infraspecific_name": "strain=GSE06", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/03/17", "asm_name": "ASM159338v1", "asm_submitter": "Korea University", "gbrs_paired_asm": "GCA_001593385.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/593/385/GCF_001593385.1_ASM159338v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5329483", "genome_size_ungapped": "5329483", "gc_percent": "36.000000", "replicon_count": "0", "scaffold_count": "47", "contig_count": "47", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001593385.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4814", "protein_coding_gene_count": "4713", "non_coding_gene_count": "84", "pubmed_id": "27313310" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-03-17", "dateModified": "2016-03-17", "datePublished": "2016-03-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Chryseobacterium cucumeris" ], "sample_taxid": [ "1813611" ], "sample_host_organism": [ "Cucumis sativus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Gunsan" ], "sample_host_location_id": [], "data_size": "1.491 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5329483", "Number of Sequences": "47", "Longest Sequences (bp)": "1437779", "N50 (bp)": "611595", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.1", "Number of CDSs": "4685", "Average Protein Length": "329.0", "Coding Ratio (%)": "86.8", "Number of rRNAs": "3", "Number of tRNAs": "79", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chryseobacterium cucumeris", "strain": "strain=GSE06", "accession": "GCA_001593385.1", "taxid": 1813611, "species_taxid": 1813611, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1761, "total_fragments": 1761, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Chryseobacterium candidae", "strain": "strain=JC507", "accession": "GCA_004916905.1", "taxid": 1978493, "species_taxid": 1978493, "relation_to_type": "type", "validated": true, "ani": 90.022, "matched_fragments": 1278, "total_fragments": 1761, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium gleum", "strain": "strain=ATCC 35910", "accession": "GCA_000143785.1", "taxid": 250, "species_taxid": 250, "relation_to_type": "type", "validated": true, "ani": 87.5509, "matched_fragments": 1334, "total_fragments": 1761, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium gleum", "strain": "strain=NCTC11432", "accession": "GCA_900636535.1", "taxid": 250, "species_taxid": 250, "relation_to_type": "type", "validated": true, "ani": 87.5043, "matched_fragments": 1348, "total_fragments": 1761, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium gleum", "strain": "strain=FDAARGOS_1103", "accession": "GCA_016766875.1", "taxid": 250, "species_taxid": 250, "relation_to_type": "type", "validated": true, "ani": 87.4936, "matched_fragments": 1348, "total_fragments": 1761, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium rhizoplanae", "strain": "strain=DSM 29371", "accession": "GCA_900182655.1", "taxid": 1609531, "species_taxid": 1609531, "relation_to_type": "type", "validated": true, "ani": 87.353, "matched_fragments": 1365, "total_fragments": 1761, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium sediminis", "strain": "strain=IMT-174", "accession": "GCA_008386505.1", "taxid": 1679494, "species_taxid": 1679494, "relation_to_type": "type", "validated": true, "ani": 87.2919, "matched_fragments": 1339, "total_fragments": 1761, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium panacisoli", "strain": "strain=Gsoil 183", "accession": "GCA_008274625.1", "taxid": 1807141, "species_taxid": 1807141, "relation_to_type": "type", "validated": true, "ani": 87.2392, "matched_fragments": 1336, "total_fragments": 1761, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium aureum", "strain": "strain=17S1E7", "accession": "GCA_003971235.1", "taxid": 2497456, "species_taxid": 2497456, "relation_to_type": "type", "validated": true, "ani": 86.8134, "matched_fragments": 1329, "total_fragments": 1761, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium culicis", "strain": "strain=DSM 23031", "accession": "GCA_900108365.1", "taxid": 680127, "species_taxid": 680127, "relation_to_type": "type", "validated": true, "ani": 86.4665, "matched_fragments": 1302, "total_fragments": 1761, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium viscerum", "strain": "strain=687B-08", "accession": "GCA_002899945.2", "taxid": 1037377, "species_taxid": 1037377, "relation_to_type": "type", "validated": true, "ani": 86.3255, "matched_fragments": 1347, "total_fragments": 1761, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium gwangjuense", "strain": "strain=THG-A18", "accession": "GCA_021311115.1", "taxid": 1069980, "species_taxid": 1069980, "relation_to_type": "type", "validated": true, "ani": 80.6589, "matched_fragments": 715, "total_fragments": 1761, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium tagetis", "strain": "strain=RG1", "accession": "GCA_016735585.2", "taxid": 2801334, "species_taxid": 2801334, "relation_to_type": "type", "validated": true, "ani": 80.4856, "matched_fragments": 785, "total_fragments": 1761, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium ginsenosidimutans", "strain": "strain=THG 15", "accession": "GCA_024807225.1", "taxid": 687846, "species_taxid": 687846, "relation_to_type": "type", "validated": true, "ani": 80.0856, "matched_fragments": 808, "total_fragments": 1761, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium fistulae", "strain": "strain=CECT 9393", "accession": "GCA_902729325.1", "taxid": 2675058, "species_taxid": 2675058, "relation_to_type": "type", "validated": true, "ani": 79.8225, "matched_fragments": 525, "total_fragments": 1761, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium schmidteae", "strain": "strain=Marseille-P9602", "accession": "GCA_903166575.1", "taxid": 2730404, "species_taxid": 2730404, "relation_to_type": "type", "validated": true, "ani": 79.3565, "matched_fragments": 619, "total_fragments": 1761, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": 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"coccobacillus_cell_shape": 0.018, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Chryseobacterium", "cucumeris" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }