# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_59	LOCUS_00580	sequence002:1..1277(+)	partial			WP_011836806.1	ABC transporter ATP-binding protein	100.0	73.0	95.8
MGA_69	LOCUS_00680	sequence002:8556..8774(+)	partial			WP_011836813.1	UPF0223 family protein	83.3	65.2	93.3
MGA_108	LOCUS_01050	sequence004:7664..8071(-)	partial			WP_011836516.1	ABC transporter permease	100.0	25.2	87.4
MGA_134	LOCUS_01310	sequence004:35291..35986(-)	frameshift		35991	WP_061603534.1	HAD family hydrolase	100.0	82.5	93.1
MGA_135	LOCUS_01320	sequence004:35947..36132(-)	frameshift		35991	WP_061603534.1	HAD family hydrolase	88.5	19.3	79.6
MGA_140	LOCUS_01360	sequence005:205..>1207(-)	partial			WP_002894312.1	ATP-dependent zinc metalloprotease FtsH	100.0	50.5	98.2
MGA_213	LOCUS_02080	sequence007:31296..31505(+)	partial			WP_002900787.1	helix-turn-helix transcriptional regulator	100.0	63.9	100.0
MGA_219	LOCUS_02140	sequence007:35744..36205(+)	partial			WP_002263400.1	helix-turn-helix domain-containing protein	87.6	43.4	51.5
MGA_220	LOCUS_02150	sequence007:36274..36501(-)	partial			WP_109289924.1	IS3 family transposase	60.0	10.0	57.8
MGA_250	LOCUS_02430	sequence008:11387..>12070(-)	partial			WP_011836973.1	type I DNA topoisomerase	100.0	32.6	98.2
MGA_254	LOCUS_02470	sequence009:5419..>6046(-)	partial			WP_011836479.1	glycine betaine/L-proline ABC transporter ATP-binding protein	100.0	52.5	100.0
MGA_302	LOCUS_02910	sequence013:390..1058(+)	frameshift		1028	WP_002932053.1	AraC family transcriptional regulator	97.7	74.8	97.2
MGA_309	LOCUS_02980	sequence013:8309..8812(-)	internal_stop_codon	8816..8818(-)		WP_011836471.1	methionine ABC transporter ATP-binding protein	100.0	47.0	97.6
MGA_310	LOCUS_02990	sequence013:8816..9376(-)	internal_stop_codon	8816..8818(-)		WP_011836471.1	methionine ABC transporter ATP-binding protein	100.0	52.4	99.5
MGA_313	LOCUS_03020	sequence013:11848..12138(-)	partial			WP_011836699.1	DUF1310 family protein	95.8	71.9	42.4
MGA_317	LOCUS_03060	sequence013:15562..15726(+)	partial			WP_011836469.1	NADP-specific glutamate dehydrogenase	90.7	10.9	87.8
MGA_346	LOCUS_03340	sequence014:17901..18038(+)	partial			WP_002897213.1	SPJ_0845 family protein	66.7	66.7	100.0
MGA_374	LOCUS_03620	sequence014:48258..48554(+)	partial			WP_120719018.1	IS3 family transposase	74.5	16.0	53.4
MGA_451	LOCUS_04390	sequence015:51214..52866(-)	partial			WP_012582780.1	FtsX-like permease family protein	79.8	59.6	19.7
MGA_491	LOCUS_04790	sequence015:100217..100774(-)	frameshift		100773	WP_001281642.1	ISL3 family transposase	100.0	42.5	98.9
MGA_492	LOCUS_04800	sequence015:100750..101538(-)	frameshift		100776	WP_001281642.1	ISL3 family transposase	97.3	57.5	96.9
MGA_500	LOCUS_04880	sequence015:107169..108008(-)	partial			WP_012047606.1	phage replisome organizer N-terminal domain-containing protein	61.3	57.6	49.7
MGA_521	LOCUS_05080	sequence016:16635..17147(+)	frameshift		17201,17138	WP_154650207.1	ISL3 family transposase	92.4	67.1	90.4
MGA_522	LOCUS_05090	sequence016:17268..17774(+)	frameshift		17201,17138,17763	WP_115276001.1	ISL3 family transposase	98.2	39.5	87.9
MGA_558	LOCUS_05450	sequence016:54268..54879(-)	partial			WP_002895005.1	lipopolysaccharide biosynthesis protein	94.6	45.3	37.5
MGA_589	LOCUS_05730	sequence020:3..320(+)	partial			WP_011836815.1	RsmF rRNA methyltransferase first C-terminal domain-containing protein	100.0	24.2	93.3
MGA_619	LOCUS_06010	sequence021:22288..23220(-)	partial			WP_011836945.1	ATP-dependent Clp protease ATP-binding subunit	100.0	41.5	95.8
MGA_635	LOCUS_06160	sequence022:1..663(+)	partial			WP_002900741.1	F0F1 ATP synthase subunit alpha	100.0	43.9	98.2
MGA_666	LOCUS_06470	sequence022:29934..30095(+)	partial			WP_002895966.1	hypothetical protein	67.9	67.9	100.0
MGA_674	LOCUS_06550	sequence022:36606..36827(+)	frameshift		36815	WP_002933016.1	BlaI/MecI/CopY family transcriptional regulator	95.9	56.0	98.6
MGA_675	LOCUS_06560	sequence022:36824..36985(+)	frameshift		36815	WP_002933016.1	BlaI/MecI/CopY family transcriptional regulator	100.0	42.4	98.1
MGA_679	LOCUS_06600	sequence022:40410..40586(+)	partial			WP_000048054.1	30S ribosomal protein S21	74.1	74.1	100.0
MGA_687	LOCUS_06680	sequence022:48335..52369(-)	internal_stop_codon	52448..52450(-)		WP_002485492.1	hypothetical protein	10.2	26.6	41.3
MGA_688	LOCUS_06690	sequence022:52448..53815(-)	internal_stop_codon	54017..54019(-),53930..53932(-),53915..53917(-),53945..53947(-),54059..54061(-),53861..53863(-),52448..52450(-)		WP_002485492.1	hypothetical protein	33.0	30.9	43.5
MGA_689	LOCUS_06700	sequence022:53907..54239(+)	partial			WP_011836739.1	accessory Sec-dependent serine-rich glycoprotein adhesin	100.0	6.8	62.7
MGA_700	LOCUS_06810	sequence022:69088..69309(+)	partial			WP_011836749.1	accessory secretory protein Asp5	64.4	64.4	91.5
MGA_744	LOCUS_07230	sequence024:142..1995(-)	partial			WP_011837728.1	YfhO family protein	100.0	71.7	96.6
MGA_768	LOCUS_07470	sequence024:26753..27064(+)	internal_stop_codon	27062..27064(+)		WP_037615095.1	HAD family phosphatase	100.0	49.8	87.4
MGA_769	LOCUS_07480	sequence024:27074..27382(+)	internal_stop_codon	27062..27064(+)		WP_037615095.1	HAD family phosphatase	95.1	46.9	91.8
MGA_779	LOCUS_07580	sequence024:36223..36504(-)	internal_stop_codon	36580..36582(-),36574..36576(-)		WP_135783035.1	DUF4947 domain-containing protein	100.0	41.1	43.0
MGA_798	LOCUS_07770	sequence025:785..1180(-)	frameshift		832	WP_174850133.1	IS3 family transposase	83.2	27.1	89.0
MGA_865	LOCUS_08380	sequence029:19602..19937(-)	partial			WP_011837100.1	DUF5590 domain-containing protein	100.0	68.5	94.6
MGA_879	LOCUS_08520	sequence029:32103..32675(-)	internal_stop_codon	32103..32105(-)		WP_002897353.1	GNAT family N-acetyltransferase	100.0	66.4	90.0
MGA_884	LOCUS_08570	sequence029:36459..37100(-)	internal_stop_codon	37107..37109(-)		WP_002904720.1	ZIP family manganese transporter TmpA	100.0	77.7	93.4
MGA_885	LOCUS_08580	sequence029:37107..37283(-)	internal_stop_codon	37107..37109(-)		WP_002904720.1	ZIP family manganese transporter TmpA	100.0	21.2	98.3
MGA_906	LOCUS_08790	sequence029:59505..59900(-)	frameshift		59522,59958	WP_012775577.1	membrane protein	96.2	38.3	45.2
MGA_907	LOCUS_08800	sequence029:59905..60198(-)	frameshift		59958	WP_000369170.1	hypothetical protein	90.7	24.7	35.2
MGA_943	LOCUS_09160	sequence029:93287..94186(-)	partial			WP_052846404.1	ABC transporter ATP-binding protein	73.6	70.9	35.1
MGA_944	LOCUS_09170	sequence029:94480..>95432(-)	partial			WP_002900051.1	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	100.0	68.0	99.1
MGA_952	LOCUS_09240	sequence030:4984..5415(-)	partial			WP_016523671.1	hypothetical protein	98.6	39.1	53.5
MGA_975	LOCUS_09470	sequence030:25143..27020(-)	partial			WP_209611650.1	DUF262 domain-containing protein	33.6	41.9	23.3
MGA_976	LOCUS_09480	sequence030:27014..28339(-)	partial			WP_000301909.1	DUF262 domain-containing protein	39.9	36.8	30.2
MGA_980	LOCUS_09520	sequence030:29965..30255(-)	frameshift		30380	WP_000057440.1	IS200/IS605 family transposase	100.0	62.3	100.0
MGA_1028	LOCUS_09990	sequence031:16872..17288(+)	partial			WP_011837679.1	hypothetical protein	100.0	45.4	99.3
MGA_1053	LOCUS_10220	sequence032:6844..8922(-)	partial			WP_011836928.1	YSIRK signal domain/LPXTG anchor domain surface protein	66.8	84.8	88.5
MGA_1060	LOCUS_10290	sequence032:21544..22119(-)	partial			WP_000260285.1	HNH/ENDO VII family nuclease	79.1	71.4	47.1
MGA_1073	LOCUS_10380	sequence036:1..686(+)	partial			WP_011836667.1	peptide chain release factor 3	100.0	44.2	99.6
MGA_1093	LOCUS_10580	sequence036:23080..24207(+)	partial			WP_011836679.1	DUF805 domain-containing protein	48.5	50.8	66.1
MGA_1135	LOCUS_10950	sequence039:33595..33813(-)	partial			WP_002898045.1	YqgQ family protein	68.1	68.1	100.0
MGA_1202	LOCUS_11620	sequence039:97160..97411(+)	partial			WP_081026662.1	IS3 family transposase	42.2	15.0	71.4
MGA_1208	LOCUS_11680	sequence039:102432..>103520(-)	partial			WP_011836595.1	aspartate--tRNA ligase	100.0	62.6	95.0
MGA_1222	LOCUS_11820	sequence040:13009..13479(+)	partial			WP_011016818.1	viroplasmin family protein	62.2	44.4	47.4
MGA_1252	LOCUS_12100	sequence041:23667..24041(+)	frameshift		24020	WP_011836975.1	PRD domain-containing protein	96.8	42.9	94.2
MGA_1253	LOCUS_12110	sequence041:23983..24510(+)	frameshift		24026	WP_011836975.1	PRD domain-containing protein	92.6	57.9	96.3
MGA_1272	LOCUS_12260	sequence045:1..1495(+)	partial			WP_002899695.1	valine--tRNA ligase	100.0	56.3	96.6
MGA_1274	LOCUS_12280	sequence045:2648..4552(+)	partial			WP_001291423.1	ATP-binding protein	59.0	58.6	23.7
MGA_1276	LOCUS_12290	sequence046:1..945(+)	partial			WP_011837665.1	type VII secretion protein EssC	99.0	21.2	45.1
MGA_1285	LOCUS_12370	sequence047:6356..7441(-)	partial			WP_010920707.1	HigA family addiction module antitoxin	23.8	84.6	38.6
MGA_1316	LOCUS_12680	sequence048:1..1257(+)	partial			WP_033179107.1	leucine--tRNA ligase	100.0	50.2	98.1
MGA_1389	LOCUS_13390	sequence051:1..542(+)	partial			WP_002914472.1	chaperonin GroEL	90.5	30.0	100.0
MGA_1413	LOCUS_13630	sequence051:21874..22260(+)	frameshift		21857	WP_011836393.1	GBS Bsp-like repeat-containing protein	100.0	13.3	97.7
MGA_1443	LOCUS_13910	sequence052:5939..>7706(-)	partial			WP_011836785.1	CshA/CshB family fibrillar adhesin-related protein	100.0	29.9	88.9
MGA_1444	LOCUS_13920	sequence054:1..930(+)	partial			WP_011837665.1	type VII secretion protein EssC	94.8	20.6	46.8
MGA_1464	LOCUS_14100	sequence056:13574..13828(-)	frameshift,internal_stop_codon	13849..13851(-)	13860	WP_000599739.1	Fic family protein	100.0	42.3	57.6
MGA_1465	LOCUS_14110	sequence056:13825..14130(-)	frameshift,internal_stop_codon	13848..13850(-)	14129,13859	WP_000599739.1	Fic family protein	88.1	44.3	53.9
MGA_1503	LOCUS_14490	sequence056:50448..52178(-)	partial			WP_002263022.1	hypothetical protein	58.5	56.0	25.9
MGA_1504	LOCUS_14500	sequence056:52194..53231(-)	partial			WP_000808449.1	membrane protein	57.1	57.6	29.5
MGA_1536	LOCUS_14820	sequence057:9..218(-)	partial			WP_011817289.1	IS4 family transposase	79.7	13.9	78.2
MGA_1537	LOCUS_14830	sequence058:1..1649(+)	partial			WP_033179096.1	DNA-directed RNA polymerase subunit beta	96.2	44.4	99.4
MGA_1591	LOCUS_15000	sequence097:8197..8652(-)	internal_stop_codon	8725..8727(-)		WP_011837060.1	hypothetical protein	92.1	63.5	77.0
MGA_1592	LOCUS_15010	sequence097:8906..9193(-)	partial			WP_011837056.1	hypothetical protein	100.0	51.9	41.1
MGA_1600	LOCUS_15090	sequence097:13409..14614(-)	partial			WP_011837665.1	type VII secretion protein EssC	10.7	2.9	95.3
MGA_1611	LOCUS_15200	sequence097:20431..>22770(-)	partial			WP_011837067.1	pneumococcal-type histidine triad protein	100.0	66.2	94.0
MGA_1631	LOCUS_15380	sequence099:14954..15112(-)	partial			WP_002903177.1	hypothetical protein	88.5	40.0	84.8
MGA_1662	LOCUS_15680	sequence100:30478..30783(-)	frameshift		30770	WP_011836564.1	PAS domain-containing sensor histidine kinase	97.0	20.5	99.0
MGA_1663	LOCUS_15690	sequence100:30753..31853(-)	frameshift		30770	WP_011836564.1	PAS domain-containing sensor histidine kinase	98.6	75.5	99.2
MGA_1754	LOCUS_16600	sequence101:783..2048(-)	partial			WP_014208195.1	type II secretion system secretin GspD	63.7	38.9	34.5
MGA_1765	LOCUS_16710	sequence102:1..865(+)	partial			WP_011836355.1	DNA-directed RNA polymerase subunit beta'	100.0	23.6	97.6
MGA_1797	LOCUS_17030	sequence102:26312..26701(+)	partial			WP_002903480.1	DUF4651 domain-containing protein	62.0	84.2	98.8
MGA_1813	LOCUS_17170	sequence103:69..647(+)	partial			WP_011103873.1	non-ribosomal peptide synthetase	89.6	5.6	32.6
MGA_1901	LOCUS_18040	sequence104:88839..89189(-)	partial			WP_002902079.1	hypothetical protein	100.0	71.6	100.0
MGA_1942	LOCUS_18450	sequence104:132208..132447(+)	partial			WP_002893931.1	GlsB/YeaQ/YmgE family stress response membrane protein	74.7	74.7	94.9
MGA_1957	LOCUS_18600	sequence104:145709..145843(+)	partial			WP_002893904.1	50S ribosomal protein L34	59.1	59.1	100.0
MGA_2002	LOCUS_19040	sequence105:27874..28152(+)	internal_stop_codon	28150..28152(+),28297..28299(+)		WP_011836806.1	ABC transporter ATP-binding protein	100.0	15.8	98.9
MGA_2003	LOCUS_19050	sequence105:28177..28299(+)	internal_stop_codon	28150..28152(+),28297..28299(+)		WP_011836806.1	ABC transporter ATP-binding protein	100.0	6.9	100.0
MGA_2175	LOCUS_20720	sequence109:29108..29422(+)	partial			WP_002893503.1	DNA-directed RNA polymerase subunit omega	62.5	62.5	100.0
MGA_2198	LOCUS_20940	sequence110:4023..4889(+)	frameshift		4859	WP_002917397.1	hypothetical protein	96.9	64.1	37.1
MGA_2199	LOCUS_20950	sequence110:4964..5365(+)	frameshift		4859	WP_002917397.1	hypothetical protein	100.0	28.4	83.5
MGA_2204	LOCUS_21000	sequence110:13339..13623(+)	partial			WP_001054128.1	helix-turn-helix transcriptional regulator	62.8	31.2	47.5
MGA_2217	LOCUS_21130	sequence110:24407..24595(+)	frameshift		24556	WP_011836833.1	hypothetical protein	91.9	37.5	61.4
MGA_2218	LOCUS_21140	sequence110:24592..24864(+)	frameshift		24556	WP_011836833.1	hypothetical protein	100.0	59.2	84.4
MGA_2265	LOCUS_21610	sequence110:84388..87339(+)	partial			WP_011476404.1	Xaa-Pro dipeptidyl-peptidase	69.5	83.0	30.6