{ "type": "genome", "identifier": "GCF_001593525.1", "organism": "Streptococcus sanguinis", "title": "Streptococcus sanguinis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Malaya", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001593525.1", "bioproject": "PRJNA224116", "biosample": "SAMN03480625", "wgs_master": "LBFD00000000.1", "refseq_category": "na", "taxid": "1305", "species_taxid": "1305", "organism_name": "Streptococcus sanguinis", "infraspecific_name": "strain=NCTC 7863", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/03/17", "asm_name": "ASM159352v1", "asm_submitter": "University of Malaya", "gbrs_paired_asm": "GCA_001593525.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/593/525/GCF_001593525.1_ASM159352v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2302607", "genome_size_ungapped": "2302607", "gc_percent": "43.500000", "replicon_count": "0", "scaffold_count": "110", "contig_count": "110", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001593525.1-RS_2025_01_12", "annotation_date": "2025-01-12", "total_gene_count": "2304", "protein_coding_gene_count": "2194", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-03-17", "dateModified": "2016-03-17", "datePublished": "2016-03-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptococcus sanguinis SK1 = NCTC 7863" ], "sample_taxid": [ "888807" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [ "endocarditis" ], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "0.658 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2302607", "Number of Sequences": "110", "Longest Sequences (bp)": "168045", "N50 (bp)": "67061", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "43.3", "Number of CDSs": "2150", "Average Protein Length": "302.8", "Coding Ratio (%)": "84.8", "Number of rRNAs": "1", "Number of tRNAs": "40", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus sanguinis", "strain": "strain=NCTC 7863", "accession": "GCA_001593525.1", "taxid": 1305, "species_taxid": 1305, "relation_to_type": "suspected-type", "validated": true, "ani": 100.0, "matched_fragments": 727, 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"below_threshold" }, { "organism_name": "Streptococcus cristatus", "strain": "strain=ATCC 51100", "accession": "GCA_000187855.1", "taxid": 45634, "species_taxid": 45634, "relation_to_type": "type", "validated": true, "ani": 85.0702, "matched_fragments": 407, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus cristatus", "strain": "strain=ATCC 51100", "accession": "GCA_011612585.1", "taxid": 45634, "species_taxid": 45634, "relation_to_type": "type", "validated": true, "ani": 85.0373, "matched_fragments": 408, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus cristatus", "strain": "strain=ATCC 51100", "accession": "GCA_000222765.2", "taxid": 45634, "species_taxid": 45634, "relation_to_type": "type", "validated": true, "ani": 85.0347, "matched_fragments": 401, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus 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9732", "accession": "GCA_004353325.1", "taxid": 1968889, "species_taxid": 1968889, "relation_to_type": "type", "validated": true, "ani": 79.5613, "matched_fragments": 166, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus vulneris", "strain": "strain=DM3B3", "accession": "GCA_019218685.1", "taxid": 2853160, "species_taxid": 2853160, "relation_to_type": "type", "validated": true, "ani": 79.3308, "matched_fragments": 159, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus parasuis", "strain": "strain=SUT-286", "accession": "GCA_021654455.1", "taxid": 1501662, "species_taxid": 1501662, "relation_to_type": "suspected-type", "validated": true, "ani": 78.2672, "matched_fragments": 101, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { 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