{ "type": "genome", "identifier": "GCF_001593605.1", "organism": "Algoriphagus sanaruensis", "title": "Algoriphagus sanaruensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shizuoka University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001593605.1", "bioproject": "PRJNA224116", "biosample": "SAMN04111281", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1727163", "species_taxid": "1727163", "organism_name": "Algoriphagus sanaruensis", "infraspecific_name": "strain=M8-2", "isolate": "Brackish lake", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/03/17", "asm_name": "ASM159360v1", "asm_submitter": "Shizuoka University", "gbrs_paired_asm": "GCA_001593605.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/593/605/GCF_001593605.1_ASM159360v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3882610", "genome_size_ungapped": "3882610", "gc_percent": "41.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-03", "total_gene_count": "3353", "protein_coding_gene_count": "3298", "non_coding_gene_count": "51", "pubmed_id": "31663498;27174266" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-03-17", "dateModified": "2016-03-17", "datePublished": "2016-03-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Algoriphagus sanaruensis" ], "sample_taxid": [ "1727163" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan: Hamamatsu" ], "sample_host_location_id": [], "data_size": "1.094 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3882610", "Number of Sequences": "1", "Longest Sequences (bp)": "3882610", "N50 (bp)": "3882610", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.4", "Number of CDSs": "3285", "Average Protein Length": "356.9", "Coding Ratio (%)": "90.6", "Number of rRNAs": "9", "Number of tRNAs": "41", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Algoriphagus sanaruensis", "strain": "strain=M8-2", "accession": "GCA_001593605.1", "taxid": 1727163, "species_taxid": 1727163, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1294, "total_fragments": 1294, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Algoriphagus aquaeductus", "strain": "strain=T4", "accession": "GCA_003253485.1", "taxid": 475299, "species_taxid": 475299, "relation_to_type": "type", "validated": true, "ani": 79.5895, "matched_fragments": 480, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus boseongensis", "strain": "strain=CECT 8446", "accession": "GCA_004362805.1", "taxid": 1442587, "species_taxid": 1442587, "relation_to_type": "type", "validated": true, "ani": 78.3779, "matched_fragments": 423, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus lacus", "strain": "strain=N3", "accession": "GCA_003583985.1", "taxid": 2056311, "species_taxid": 2056311, "relation_to_type": "type", "validated": true, "ani": 78.1954, "matched_fragments": 359, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus mannitolivorans", "strain": "strain=DSM 15301", "accession": "GCA_000429425.1", "taxid": 226504, "species_taxid": 226504, "relation_to_type": "type", "validated": true, "ani": 78.1379, "matched_fragments": 374, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus boritolerans", "strain": "strain=DSM 17298", "accession": "GCA_900108085.1", "taxid": 308111, "species_taxid": 308111, "relation_to_type": "type", "validated": true, "ani": 77.532, "matched_fragments": 310, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus machipongonensis", "strain": "strain=PR1", "accession": "GCA_000166275.1", "taxid": 388413, "species_taxid": 388413, "relation_to_type": "type", "validated": true, "ani": 77.2928, "matched_fragments": 188, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus algorifonticola", "strain": "strain=hg1", "accession": "GCA_007655305.1", "taxid": 2593007, "species_taxid": 2593007, "relation_to_type": "type", "validated": true, "ani": 77.2776, "matched_fragments": 229, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus zhangzhouensis", "strain": "strain=CGMCC 1.11027", "accession": "GCA_004366575.1", "taxid": 1073327, "species_taxid": 1073327, "relation_to_type": "type", "validated": true, "ani": 77.1268, "matched_fragments": 241, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus iocasae", "strain": "strain=DSM 102044", "accession": "GCA_014206875.1", "taxid": 1836499, "species_taxid": 1836499, "relation_to_type": "type", "validated": true, "ani": 77.104, "matched_fragments": 220, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus alkaliphilus", "strain": "strain=DSM 22703", "accession": "GCA_900103735.1", "taxid": 279824, "species_taxid": 279824, "relation_to_type": "type", "validated": true, "ani": 77.0761, "matched_fragments": 319, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus zhangzhouensis", "strain": "strain=DSM 25035", "accession": "GCA_900148515.1", "taxid": 1073327, "species_taxid": 1073327, "relation_to_type": "type", "validated": true, "ani": 77.0704, "matched_fragments": 236, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus ratkowskyi", "strain": "strain=DSM 22686", "accession": "GCA_002150505.1", "taxid": 57028, "species_taxid": 57028, "relation_to_type": "type", "validated": true, "ani": 76.8768, "matched_fragments": 139, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, 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"GCF_014324365.1", "gtdb_species": "s__Algoriphagus sp014324365", "ani": 79.686, "matched_fragments": 483, "total_fragments": 1294, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Algoriphagus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003253485.1", "gtdb_species": "s__Algoriphagus aquaeductus", "ani": 79.6003, "matched_fragments": 479, "total_fragments": 1294, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Algoriphagus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004362805.1", "gtdb_species": "s__Algoriphagus 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