{ "type": "genome", "identifier": "GCF_001596795.1", "organism": "Pseudoalteromonas telluritireducens", "title": "Pseudoalteromonas telluritireducens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Oceanology, Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001596795.1", "bioproject": "PRJNA224116", "biosample": "SAMN04566107", "wgs_master": "LVCM00000000.1", "refseq_category": "reference genome", "taxid": "162160", "species_taxid": "162160", "organism_name": "Pseudoalteromonas telluritireducens", "infraspecific_name": "strain=DSM 16098", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/03/23", "asm_name": "ASM159679v1", "asm_submitter": "Institute of Oceanology, Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_001596795.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/596/795/GCF_001596795.1_ASM159679v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4406320", "genome_size_ungapped": "4406320", "gc_percent": "41.000000", "replicon_count": "0", "scaffold_count": "65", "contig_count": "65", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2023-07-23", "total_gene_count": "4043", "protein_coding_gene_count": "3525", "non_coding_gene_count": "120", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-03-23", "dateModified": "2016-03-23", "datePublished": "2016-03-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudoalteromonas telluritireducens" ], "sample_taxid": [ "162160" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Pacific Ocean: Juan de Fuca Ridge" ], "sample_host_location_id": [], "data_size": "1.248 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4406320", "Number of Sequences": "65", "Longest Sequences (bp)": "471097", "N50 (bp)": "165877", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "40.9", "Number of CDSs": "4159", "Average Protein Length": "306.3", "Coding Ratio (%)": "86.7", "Number of rRNAs": "10", "Number of tRNAs": "87", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudoalteromonas espejiana", "strain": "strain=ATCC 29659", "accession": "GCA_002221525.1", "taxid": 28107, "species_taxid": 28107, "relation_to_type": "type", "validated": true, "ani": 87.6011, "matched_fragments": 1205, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas espejiana", "strain": "strain=NBRC 102222", "accession": "GCA_007989585.1", "taxid": 28107, "species_taxid": 28107, "relation_to_type": "type", "validated": true, "ani": 87.5487, "matched_fragments": 1163, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas carrageenovora", "strain": "strain=NBRC 12985", "accession": "GCA_006539245.1", "taxid": 227, "species_taxid": 227, "relation_to_type": "type", "validated": true, "ani": 86.0293, "matched_fragments": 1082, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas carrageenovora", "strain": "strain=ATCC 43555", "accession": "GCA_900239935.1", "taxid": 227, "species_taxid": 227, "relation_to_type": "type", "validated": true, "ani": 86.0008, "matched_fragments": 1126, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas carrageenovora", "strain": "strain=IAM 12662", "accession": "GCA_014925295.1", "taxid": 227, "species_taxid": 227, "relation_to_type": "type", "validated": true, "ani": 85.8961, "matched_fragments": 1147, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas distincta", "strain": "strain=ATCC 700518", "accession": "GCA_000814675.1", "taxid": 77608, "species_taxid": 77608, "relation_to_type": "type", "validated": true, "ani": 83.042, "matched_fragments": 1037, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas undina", "strain": "strain=DSM 6065", "accession": "GCA_000238275.4", "taxid": 43660, "species_taxid": 43660, "relation_to_type": "type", "validated": true, "ani": 81.6163, "matched_fragments": 767, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas issachenkonii", "strain": "strain=KMM 3549", "accession": "GCA_002310795.1", "taxid": 152297, "species_taxid": 152297, "relation_to_type": "suspected-type", "validated": true, "ani": 81.4455, "matched_fragments": 798, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas issachenkonii", "strain": "strain=KCTC 12958", "accession": "GCA_001455325.1", "taxid": 152297, "species_taxid": 152297, "relation_to_type": "suspected-type", "validated": true, "ani": 81.4082, "matched_fragments": 794, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas tetraodonis", "strain": "strain=GFC", "accession": "GCA_002310835.1", "taxid": 43659, "species_taxid": 43659, "relation_to_type": "suspected-type", "validated": true, "ani": 81.3901, "matched_fragments": 796, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas tetraodonis", "strain": "strain=NBRC 103034", "accession": "GCA_007991235.1", "taxid": 43659, "species_taxid": 43659, "relation_to_type": "suspected-type", "validated": true, "ani": 81.3874, "matched_fragments": 767, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas rhizosphaerae", "strain": "strain=RA15", "accession": "GCA_902498845.1", "taxid": 2518973, "species_taxid": 2518973, "relation_to_type": "type", "validated": true, "ani": 80.1854, "matched_fragments": 594, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio nitrifigilis", "strain": "strain=NFV-1", "accession": "GCA_015686695.1", "taxid": 2789781, "species_taxid": 2789781, "relation_to_type": "type", "validated": true, "ani": 76.3862, "matched_fragments": 50, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella ulleungensis", "strain": "strain=KCTC 62130", "accession": "GCA_023283965.1", "taxid": 2282699, "species_taxid": 2282699, "relation_to_type": "type", "validated": true, "ani": 76.3652, "matched_fragments": 67, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella basaltis", "strain": "strain=KCTC 22121", "accession": "GCA_023283885.1", "taxid": 472183, "species_taxid": 472183, "relation_to_type": "type", "validated": true, "ani": 76.332, "matched_fragments": 71, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_007988745.1", "gtdb_species": "s__Pseudoalteromonas atlantica", "ani": 97.8571, "matched_fragments": 1291, "total_fragments": 1443, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudoalteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.93", "min_intra_species_ani": "97.66", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.85", "num_clustered_genomes": 29, "status": "conclusive" }, { "accession": "GCF_001401805.1", "gtdb_species": "s__Pseudoalteromonas sp001401805", "ani": 92.6889, "matched_fragments": 1246, "total_fragments": 1443, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudoalteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.16", "min_intra_species_ani": "97.37", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.90", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_002221525.1", "gtdb_species": "s__Pseudoalteromonas espejiana", "ani": 87.5986, "matched_fragments": 1205, "total_fragments": 1443, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudoalteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900239935.1", "gtdb_species": "s__Pseudoalteromonas carrageenovora", "ani": 86.0029, "matched_fragments": 1125, "total_fragments": 1443, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudoalteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.00", "min_intra_species_ani": "96.44", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.91", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_018100985.1", "gtdb_species": "s__Pseudoalteromonas sp018100985", "ani": 85.0828, 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"doubling_h": 0.348, "growth_tmp": 24.342, "optimum_tmp": 24.901, "optimum_ph": 7.588, "genome_size": 4777827.727, "gc_content": 41.108, "coding_genes": 3972.54, "rRNA16S_genes": 8.705, "tRNA_genes": 104.429, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.941, "range_salinity": 0.8, "facultative_respiration": 0.083, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.916, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Pseudoalteromonas", "telluritireducens" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }