{ "type": "genome", "identifier": "GCF_001598035.1", "organism": "Streptococcus halotolerans", "title": "Streptococcus halotolerans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute for Communicable Disease Control and Prevention, China CDC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001598035.1", "bioproject": "PRJNA224116", "biosample": "SAMN04562598", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1814128", "species_taxid": "1814128", "organism_name": "Streptococcus halotolerans", "infraspecific_name": "strain=HTS9", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/03/28", "asm_name": "ASM159803v1", "asm_submitter": "National Institute for Communicable Disease Control and Prevention, China CDC", "gbrs_paired_asm": "GCA_001598035.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/598/035/GCF_001598035.1_ASM159803v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2182100", "genome_size_ungapped": "2182100", "gc_percent": "39.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-03", "total_gene_count": "2046", "protein_coding_gene_count": "1891", "non_coding_gene_count": "90", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-03-28", "dateModified": "2016-03-28", "datePublished": "2016-03-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptococcus halotolerans" ], "sample_taxid": [ "1814128" ], "sample_host_organism": [ "Marmota himalayana" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Qinghai-Tibet Plateau" ], "sample_host_location_id": [], "data_size": "0.610 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2182100", "Number of Sequences": "1", "Longest Sequences (bp)": "2182100", "N50 (bp)": "2182100", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "39.2", "Number of CDSs": "1968", "Average Protein Length": "303.6", "Coding Ratio (%)": "82.1", "Number of rRNAs": "18", "Number of tRNAs": "69", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus halotolerans", "strain": "strain=HTS9", "accession": "GCA_001598035.1", 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"relation_to_type": "type", "validated": true, "ani": 79.9413, "matched_fragments": 288, "total_fragments": 727, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus thermophilus", "strain": "strain=ATCC 19258", "accession": "GCA_010120595.1", "taxid": 1308, "species_taxid": 1308, "relation_to_type": "type", "validated": true, "ani": 79.8379, "matched_fragments": 114, "total_fragments": 727, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus lutetiensis", "strain": "strain=NCTC13774", "accession": "GCA_900475675.1", "taxid": 150055, "species_taxid": 150055, "relation_to_type": "type", "validated": true, "ani": 79.7743, "matched_fragments": 122, "total_fragments": 727, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus lutetiensis", "strain": "strain=FDAARGOS_1158", "accession": "GCA_016725165.1", "taxid": 150055, "species_taxid": 150055, "relation_to_type": "type", "validated": true, "ani": 79.6944, "matched_fragments": 121, "total_fragments": 727, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus constellatus subsp. constellatus", "strain": "strain=CCUG 24889", "accession": "GCA_023167545.1", "taxid": 184246, "species_taxid": 76860, "relation_to_type": "type", "validated": true, "ani": 79.3981, "matched_fragments": 77, "total_fragments": 727, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus vulneris", "strain": "strain=DM3B3", "accession": "GCA_019218685.1", "taxid": 2853160, "species_taxid": 2853160, "relation_to_type": "type", "validated": true, "ani": 79.0469, "matched_fragments": 71, "total_fragments": 727, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus saliviloxodontae", "strain": "strain=DSM 27513", "accession": "GCA_016908655.1", "taxid": 1349416, "species_taxid": 1349416, "relation_to_type": "type", "validated": true, "ani": 78.9805, "matched_fragments": 126, "total_fragments": 727, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus thermophilus", "strain": "strain=DSM 20617", "accession": "GCA_019972875.1", "taxid": 1308, "species_taxid": 1308, "relation_to_type": "type", "validated": true, "ani": 78.9246, "matched_fragments": 106, "total_fragments": 727, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus troglodytae", "strain": "strain=TKU 31", "accession": "GCA_002355215.1", "taxid": 1111760, "species_taxid": 1111760, "relation_to_type": "type", "validated": true, "ani": 78.7184, "matched_fragments": 100, "total_fragments": 727, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus loxodontisalivarius", "strain": "strain=DSM 27382", "accession": "GCA_016908645.1", "taxid": 1349415, "species_taxid": 1349415, "relation_to_type": "type", "validated": true, "ani": 78.6658, "matched_fragments": 136, "total_fragments": 727, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus caballi", "strain": "strain=DSM 19004", "accession": "GCA_000379985.1", "taxid": 439220, "species_taxid": 439220, "relation_to_type": "type", "validated": true, "ani": 77.9628, "matched_fragments": 135, "total_fragments": 727, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus mutans", "strain": "strain=DSM 20523", "accession": "GCA_000375505.1", "taxid": 1309, "species_taxid": 1309, "relation_to_type": "type", "validated": true, "ani": 77.8973, "matched_fragments": 93, "total_fragments": 727, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001598035.1", "gtdb_species": "s__Streptococcus halotolerans", "ani": 100.0, "matched_fragments": 724, "total_fragments": 727, "gtdb_taxonomy": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Streptococcus", "halotolerans" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }