{ "type": "genome", "identifier": "GCF_001598255.1", "organism": "Mitsuaria chitosanitabida ATCC BAA-476 = NBRC 102408", "title": "Mitsuaria chitosanitabida ATCC BAA-476 = NBRC 102408", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001598255.1", "bioproject": "PRJNA224116", "biosample": "SAMD00046720", "wgs_master": "BCYP00000000.1", "refseq_category": "reference genome", "taxid": "1336246", "species_taxid": "65048", "organism_name": "Mitsuaria chitosanitabida ATCC BAA-476 = NBRC 102408", "infraspecific_name": "strain=NBRC 102408", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/03/11", "asm_name": "ASM159825v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_001598255.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/598/255/GCF_001598255.1_ASM159825v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5819413", "genome_size_ungapped": "5819413", "gc_percent": "70.000000", "replicon_count": "0", "scaffold_count": "56", "contig_count": "56", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001598255.1-RS_2024_08_12", "annotation_date": "2024-08-12", "total_gene_count": "5172", "protein_coding_gene_count": "5061", "non_coding_gene_count": "60", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-03-11", "dateModified": "2016-03-11", "datePublished": "2016-03-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Mitsuaria chitosanitabida ATCC BAA-476 = NBRC 102408" ], "sample_taxid": [ "1336246" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.563 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5819413", "Number of Sequences": "56", "Longest Sequences (bp)": "570436", "N50 (bp)": "180514", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.9", "Number of CDSs": "5141", "Average Protein Length": "337.5", "Coding Ratio (%)": "89.4", "Number of rRNAs": "2", "Number of tRNAs": "66", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mitsuaria chitinivorans", "strain": "strain=HWN-4", "accession": "GCA_002761755.1", "taxid": 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerotilus sulfidivorans", "strain": "strain=D-501", "accession": "GCA_013426975.1", "taxid": 639200, "species_taxid": 639200, "relation_to_type": "type", "validated": true, "ani": 79.9367, "matched_fragments": 695, "total_fragments": 1913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azohydromonas caseinilytica", "strain": "strain=G-1-1-14", "accession": "GCA_012927045.1", "taxid": 2728836, "species_taxid": 2728836, "relation_to_type": "type", "validated": true, "ani": 79.5704, "matched_fragments": 790, "total_fragments": 1913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azohydromonas australica", "strain": "strain=DSM 1124", "accession": "GCA_000430725.1", "taxid": 364039, "species_taxid": 364039, "relation_to_type": "type", "validated": true, "ani": 79.5505, "matched_fragments": 806, "total_fragments": 1913, "ani_threshold": 95, "status": "below_threshold" 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"bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Mitsuaria", "chitosanitabida", "ATCC", "BAA-476", "=", "NBRC", "102408" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }