{ "type": "genome", "identifier": "GCF_001598555.1", "organism": "Novosphingobium rosa NBRC 15208", "title": "Novosphingobium rosa NBRC 15208", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001598555.1", "bioproject": "PRJNA224116", "biosample": "SAMD00046712", "wgs_master": "BCZE00000000.1", "refseq_category": "reference genome", "taxid": "1219053", "species_taxid": "76978", "organism_name": "Novosphingobium rosa NBRC 15208", "infraspecific_name": "strain=NBRC 15208", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/03/11", "asm_name": "ASM159855v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_001598555.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/598/555/GCF_001598555.1_ASM159855v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6952763", "genome_size_ungapped": "6952763", "gc_percent": "64.500000", "replicon_count": "0", "scaffold_count": "194", "contig_count": "194", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001598555.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "6218", "protein_coding_gene_count": "6087", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-03-11", "dateModified": "2016-03-11", "datePublished": "2016-03-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Novosphingobium rosa NBRC 15208" ], "sample_taxid": [ "1219053" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.919 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6952763", "Number of Sequences": "194", "Longest Sequences (bp)": "357524", "N50 (bp)": "77545", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.5", "Number of CDSs": "5983", "Average Protein Length": "339.7", "Coding Ratio (%)": "87.7", "Number of rRNAs": "3", "Number of tRNAs": "55", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Novosphingobium rosa", "strain": "strain=NBRC 15208", "accession": "GCA_001598555.1", "taxid": 76978, "species_taxid": 76978, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2207, "total_fragments": 2218, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Novosphingobium ovatum", "strain": "strain=FSY-8", "accession": "GCA_009909235.1", "taxid": 1908523, "species_taxid": 1908523, "relation_to_type": "type", "validated": true, "ani": 79.9188, "matched_fragments": 569, "total_fragments": 2218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium sediminicola", "strain": "strain=DSM 27057", "accession": "GCA_014196525.1", "taxid": 563162, "species_taxid": 563162, "relation_to_type": "type", "validated": true, "ani": 79.9148, "matched_fragments": 805, "total_fragments": 2218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium umbonatum", "strain": "strain=FSY-9", "accession": "GCA_004005905.1", "taxid": 1908524, "species_taxid": 1908524, "relation_to_type": "type", "validated": true, "ani": 79.7072, "matched_fragments": 602, "total_fragments": 2218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium arvoryzae", "strain": "strain=KCTC 32422", "accession": "GCA_014652615.1", "taxid": 1256514, "species_taxid": 1256514, "relation_to_type": "type", "validated": true, "ani": 78.7692, "matched_fragments": 420, "total_fragments": 2218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium pokkalii", "strain": "strain=KCTC 42224", "accession": "GCA_014652855.1", "taxid": 1770194, "species_taxid": 1770194, "relation_to_type": "type", "validated": true, "ani": 78.7249, "matched_fragments": 569, "total_fragments": 2218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium percolationis", "strain": "strain=c1", "accession": "GCA_020179425.1", "taxid": 2871811, "species_taxid": 2871811, "relation_to_type": "type", "validated": true, "ani": 78.6683, "matched_fragments": 481, "total_fragments": 2218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium capsulatum", "strain": "strain=NBRC 12533", "accession": "GCA_001598375.1", "taxid": 13688, "species_taxid": 13688, "relation_to_type": "type", "validated": true, "ani": 78.6135, "matched_fragments": 545, "total_fragments": 2218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium huizhouense", "strain": "strain=c7", "accession": "GCA_020179475.1", "taxid": 2866625, "species_taxid": 2866625, "relation_to_type": "type", "validated": true, "ani": 78.5972, "matched_fragments": 447, "total_fragments": 2218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium lindaniclasticum", "strain": "strain=LE124", "accession": "GCA_000445125.1", "taxid": 1329895, "species_taxid": 1329895, "relation_to_type": "type", "validated": true, "ani": 78.4231, "matched_fragments": 455, "total_fragments": 2218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium profundi", "strain": "strain=F72", "accession": "GCA_018491765.1", "taxid": 1774954, "species_taxid": 1774954, "relation_to_type": "type", "validated": true, "ani": 78.202, "matched_fragments": 443, "total_fragments": 2218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium silvae", "strain": "strain=FGD1", "accession": "GCA_009856825.1", "taxid": 2692619, "species_taxid": 2692619, "relation_to_type": "type", "validated": true, "ani": 78.1919, "matched_fragments": 388, "total_fragments": 2218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium decolorationis", "strain": "strain=502str22", "accession": "GCA_018417475.1", "taxid": 2698673, "species_taxid": 2698673, "relation_to_type": "type", "validated": true, "ani": 78.1064, "matched_fragments": 429, "total_fragments": 2218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium aquimarinum", "strain": "strain=M24A2M", "accession": "GCA_009746585.1", "taxid": 2682494, "species_taxid": 2682494, "relation_to_type": "type", "validated": true, "ani": 77.8814, "matched_fragments": 329, "total_fragments": 2218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceibacterium atlanticum", "strain": "strain=26DY36", "accession": "GCA_001008165.2", "taxid": 1267766, "species_taxid": 1267766, "relation_to_type": "type", "validated": true, "ani": 77.8211, "matched_fragments": 275, "total_fragments": 2218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceibacterium ferulae", "strain": "strain=SX2RGS8", "accession": "GCA_003660445.1", "taxid": 1854641, "species_taxid": 1854641, "relation_to_type": "type", "validated": true, "ani": 77.8209, "matched_fragments": 376, "total_fragments": 2218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceibacterium atlanticum", "strain": "strain=DSM 100738", "accession": "GCA_014199315.1", "taxid": 1267766, "species_taxid": 1267766, "relation_to_type": "type", "validated": true, "ani": 77.782, "matched_fragments": 276, "total_fragments": 2218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas morindae", "strain": "strain=NBD5", "accession": "GCA_023822065.1", "taxid": 1541170, "species_taxid": 1541170, "relation_to_type": "type", "validated": true, "ani": 77.0239, "matched_fragments": 390, "total_fragments": 2218, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001598555.1", "gtdb_species": "s__Novosphingobium rosa", "ani": 100.0, "matched_fragments": 2207, "total_fragments": 2218, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Novosphingobium", "ani_circumscription_radius": 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