{ "type": "genome", "identifier": "GCF_001598795.1", "organism": "Delftia acidovorans NBRC 14950", "title": "Delftia acidovorans NBRC 14950", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001598795.1", "bioproject": "PRJNA224116", "biosample": "SAMD00046897", "wgs_master": "BCZP00000000.1", "refseq_category": "na", "taxid": "1218107", "species_taxid": "80866", "organism_name": "Delftia acidovorans NBRC 14950", "infraspecific_name": "strain=NBRC 14950", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/03/11", "asm_name": "ASM159879v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_001598795.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/598/795/GCF_001598795.1_ASM159879v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6630389", "genome_size_ungapped": "6630389", "gc_percent": "67.000000", "replicon_count": "0", "scaffold_count": "91", "contig_count": "91", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001598795.1-RS_2024_09_09", "annotation_date": "2024-09-09", "total_gene_count": "6072", "protein_coding_gene_count": "5952", "non_coding_gene_count": "69", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-03-11", "dateModified": "2016-03-11", "datePublished": "2016-03-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Delftia acidovorans NBRC 14950" ], "sample_taxid": [ "1218107" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.808 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6630389", "Number of Sequences": "91", "Longest Sequences (bp)": "618261", "N50 (bp)": "289875", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.8", "Number of CDSs": "5906", "Average Protein Length": "330.4", "Coding Ratio (%)": "88.3", "Number of rRNAs": "3", "Number of tRNAs": "64", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Delftia acidovorans", "strain": "strain=NBRC 14950", "accession": "GCA_001598795.1", "taxid": 80866, "species_taxid": 80866, 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"organism_name": "Comamonas fluminis", "strain": "strain=CJ34", "accession": "GCA_019186805.1", "taxid": 2796366, "species_taxid": 2796366, "relation_to_type": "type", "validated": true, "ani": 80.9274, "matched_fragments": 871, "total_fragments": 2167, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Diaphorobacter ruginosibacter", "strain": "strain=DSM 27467", "accession": "GCA_014395975.1", "taxid": 1715720, "species_taxid": 1715720, "relation_to_type": "type", "validated": true, "ani": 80.6625, "matched_fragments": 827, "total_fragments": 2167, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Diaphorobacter caeni", "strain": "strain=NR2-3-3-1", "accession": "GCA_015354245.1", "taxid": 2784387, "species_taxid": 2784387, "relation_to_type": "type", "validated": true, "ani": 80.5326, "matched_fragments": 818, "total_fragments": 2167, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudorhodoferax aquiterrae", 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