{ "type": "genome", "identifier": "GCF_001598835.1", "organism": "Vibrio fluvialis NBRC 103150", "title": "Vibrio fluvialis NBRC 103150", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001598835.1", "bioproject": "PRJNA224116", "biosample": "SAMD00046905", "wgs_master": "BCZR00000000.1", "refseq_category": "na", "taxid": "1219074", "species_taxid": "676", "organism_name": "Vibrio fluvialis NBRC 103150", "infraspecific_name": "strain=NBRC 103150", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/03/11", "asm_name": "ASM159883v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_001598835.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/598/835/GCF_001598835.1_ASM159883v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4753473", "genome_size_ungapped": "4753473", "gc_percent": "50.000000", "replicon_count": "0", "scaffold_count": "42", "contig_count": "42", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001598835.1-RS_2024_08_12", "annotation_date": "2024-08-12", "total_gene_count": "4437", "protein_coding_gene_count": "4322", "non_coding_gene_count": "71", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-03-11", "dateModified": "2016-03-11", "datePublished": "2016-03-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Vibrio fluvialis NBRC 103150" ], "sample_taxid": [ "1219074" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.356 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4753473", "Number of Sequences": "42", "Longest Sequences (bp)": "602929", "N50 (bp)": "244887", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "49.9", "Number of CDSs": "4357", "Average Protein Length": "319.7", "Coding Ratio (%)": "87.9", "Number of rRNAs": "3", "Number of tRNAs": "63", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vibrio fluvialis", "strain": "strain=NBRC 103150", "accession": "GCA_001598835.1", "taxid": 676, "species_taxid": 676, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1561, "total_fragments": 1563, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Vibrio fluvialis", "strain": "strain=NCTC11327", "accession": "GCA_900460245.1", "taxid": 676, "species_taxid": 676, "relation_to_type": "type", "validated": true, "ani": 99.9994, "matched_fragments": 1563, "total_fragments": 1563, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Vibrio fluvialis", "strain": "strain=ATCC 33809", "accession": "GCA_001558415.2", "taxid": 676, "species_taxid": 676, "relation_to_type": "type", "validated": true, "ani": 99.9983, "matched_fragments": 1562, "total_fragments": 1563, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Vibrio furnissii", "strain": "strain=PartQ-Vfurnissii-RM8376", "accession": "GCA_022869905.1", "taxid": 29494, "species_taxid": 29494, "relation_to_type": "type", "validated": true, "ani": 87.5674, "matched_fragments": 1272, 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}, { "organism_name": "Vibrio vulnificus", "strain": "strain=ATCC 27562", "accession": "GCA_000299635.1", "taxid": 672, "species_taxid": 672, "relation_to_type": "suspected-type", "validated": true, "ani": 79.4459, "matched_fragments": 331, "total_fragments": 1563, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio albus", "strain": "strain=E4404", "accession": "GCA_003144035.1", "taxid": 2200953, "species_taxid": 2200953, "relation_to_type": "type", "validated": true, "ani": 79.1441, "matched_fragments": 219, "total_fragments": 1563, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio gigantis", "strain": "strain=LMG 22741", "accession": "GCA_024347515.1", "taxid": 296199, "species_taxid": 296199, "relation_to_type": "type", "validated": true, "ani": 78.7526, "matched_fragments": 328, "total_fragments": 1563, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900460245.1", "gtdb_species": "s__Vibrio fluvialis", "ani": 99.9994, "matched_fragments": 1563, "total_fragments": 1563, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.04", "min_intra_species_ani": "97.07", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.86", "num_clustered_genomes": 63, "status": "conclusive" }, { "accession": "GCF_000176175.1", "gtdb_species": "s__Vibrio furnissii", "ani": 87.4546, "matched_fragments": 1285, "total_fragments": 1563, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.58", "min_intra_species_ani": "97.97", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.91", "num_clustered_genomes": 12, 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