{ "type": "genome", "identifier": "GCF_001605895.1", "organism": "Acinetobacter pragensis", "title": "Acinetobacter pragensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Public Health", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001605895.1", "bioproject": "PRJNA224116", "biosample": "SAMN04510421", "wgs_master": "LUAW00000000.1", "refseq_category": "reference genome", "taxid": "1806892", "species_taxid": "1806892", "organism_name": "Acinetobacter pragensis", "infraspecific_name": "strain=ANC 4149", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/04/04", "asm_name": "ASM160589v1", "asm_submitter": "National Institute of Public Health", "gbrs_paired_asm": "GCA_001605895.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/605/895/GCF_001605895.1_ASM160589v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3706388", "genome_size_ungapped": "3706388", "gc_percent": "44.000000", "replicon_count": "0", "scaffold_count": "72", "contig_count": "72", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001605895.1-RS_2024_11_26", "annotation_date": "2024-11-26", "total_gene_count": "3644", "protein_coding_gene_count": "3417", "non_coding_gene_count": "89", "pubmed_id": "27392433" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-04-04", "dateModified": "2016-04-04", "datePublished": "2016-04-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Acinetobacter pragensis" ], "sample_taxid": [ "1806892" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Czech Republic: Kreckov" ], "sample_host_location_id": [], "data_size": "1.051 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3706388", "Number of Sequences": "72", "Longest Sequences (bp)": "258210", "N50 (bp)": "101336", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "44.0", "Number of CDSs": "3454", "Average Protein Length": "302.0", "Coding Ratio (%)": "84.4", "Number of rRNAs": "6", "Number of tRNAs": "76", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acinetobacter pragensis", "strain": "strain=ANC 4149", "accession": "GCA_001605895.1", "taxid": 1806892, "species_taxid": 1806892, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1197, "total_fragments": 1201, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acinetobacter bouvetii", "strain": "strain=DSM 14964", "accession": "GCA_000373725.1", "taxid": 202951, "species_taxid": 202951, "relation_to_type": "type", "validated": true, "ani": 85.7062, "matched_fragments": 851, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter bouvetii", "strain": "strain=CIP 107468", "accession": "GCA_000368865.1", "taxid": 202951, "species_taxid": 202951, "relation_to_type": "type", "validated": true, "ani": 85.6152, "matched_fragments": 859, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter celticus", "strain": "strain=ANC 4603", "accession": "GCA_001707755.1", "taxid": 1891224, "species_taxid": 1891224, "relation_to_type": "type", "validated": true, "ani": 81.7088, "matched_fragments": 617, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter chengduensis", "strain": "strain=WCHAc060005", "accession": "GCA_003664645.1", "taxid": 2420890, "species_taxid": 2420890, "relation_to_type": "type", "validated": true, "ani": 80.6806, "matched_fragments": 568, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gandensis", "strain": "strain=ANC 4275", "accession": "GCA_001678755.1", "taxid": 1443941, "species_taxid": 1443941, "relation_to_type": "type", "validated": true, "ani": 80.3577, "matched_fragments": 513, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gandensis", "strain": "strain=CCUG 68482", "accession": "GCA_008802205.1", "taxid": 1443941, "species_taxid": 1443941, "relation_to_type": "type", "validated": true, "ani": 80.3055, "matched_fragments": 506, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter lwoffii", "strain": "strain=NCTC5866", "accession": "GCA_900699155.1", "taxid": 28090, "species_taxid": 28090, "relation_to_type": "type", "validated": true, "ani": 80.0213, "matched_fragments": 471, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter terrae", "strain": "strain=ANC 4282", "accession": "GCA_013004375.1", "taxid": 2731247, "species_taxid": 2731247, "relation_to_type": "type", "validated": true, "ani": 80.0144, "matched_fragments": 507, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter lwoffii", "strain": "strain=FDAARGOS 1393", "accession": "GCA_019048305.1", "taxid": 28090, "species_taxid": 28090, "relation_to_type": "type", "validated": true, "ani": 80.009, "matched_fragments": 464, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter schindleri", "strain": "strain=CIP 107287", "accession": "GCA_000368625.1", "taxid": 108981, "species_taxid": 108981, "relation_to_type": "type", "validated": true, "ani": 79.9932, "matched_fragments": 439, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pecorum", "strain": "strain=Sa1BUA6", "accession": "GCA_014837015.1", "taxid": 2762215, "species_taxid": 2762215, "relation_to_type": "type", "validated": true, "ani": 79.7882, "matched_fragments": 452, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter silvestris", "strain": "strain=ANC 4999", "accession": "GCA_002135235.1", "taxid": 1977882, "species_taxid": 1977882, "relation_to_type": "type", "validated": true, "ani": 79.4587, "matched_fragments": 352, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter baumannii", "strain": "strain=ATCC 19606", "accession": "GCA_020911985.1", "taxid": 470, "species_taxid": 470, "relation_to_type": "type", "validated": true, "ani": 78.7275, "matched_fragments": 279, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter baumannii", "strain": "strain=PartI-Abaumannii-RM8376", "accession": "GCA_022870045.1", "taxid": 470, "species_taxid": 470, "relation_to_type": "type", "validated": true, "ani": 78.7229, "matched_fragments": 279, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001605895.1", "gtdb_species": "s__Acinetobacter pragensis", "ani": 100.0, "matched_fragments": 1197, "total_fragments": 1201, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000368865.1", "gtdb_species": "s__Acinetobacter bouvetii", "ani": 85.6024, "matched_fragments": 860, "total_fragments": 1201, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.30", "min_intra_species_ani": "95.72", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.92", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_002135435.1", "gtdb_species": "s__Acinetobacter sp002135435", "ani": 83.6474, "matched_fragments": 820, "total_fragments": 1201, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001696615.3", "gtdb_species": "s__Acinetobacter sp001696615", "ani": 81.8435, "matched_fragments": 710, "total_fragments": 1201, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001707755.1", "gtdb_species": "s__Acinetobacter celticus", "ani": 81.7047, "matched_fragments": 618, "total_fragments": 1201, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003611465.1", "gtdb_species": "s__Acinetobacter tianfuensis", "ani": 81.2699, "matched_fragments": 633, "total_fragments": 1201, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002135295.1", "gtdb_species": "s__Acinetobacter sp002135295", "ani": 80.8043, "matched_fragments": 556, "total_fragments": 1201, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002455755.1", "gtdb_species": "s__Acinetobacter sp002455755", "ani": 80.3685, "matched_fragments": 426, "total_fragments": 1201, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.84", "min_intra_species_ani": "96.84", "mean_intra_species_af": "0.75", "min_intra_species_af": "0.75", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001678755.1", "gtdb_species": "s__Acinetobacter gandensis", "ani": 80.3545, "matched_fragments": 512, "total_fragments": 1201, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.74", "min_intra_species_ani": "98.30", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.84", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCA_000761495.1", "gtdb_species": "s__Acinetobacter idrijaensis", "ani": 80.0454, "matched_fragments": 446, "total_fragments": 1201, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 96.2371, "mean_intra_species_ani": "96.62", "min_intra_species_ani": "96.35", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.83", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_015602705.1", "gtdb_species": "s__Acinetobacter lwoffii_E", "ani": 80.0392, "matched_fragments": 443, "total_fragments": 1201, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 96.0499, "mean_intra_species_ani": "96.41", "min_intra_species_ani": "96.41", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", 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"num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.019, "cell_length": 0.052, "doubling_h": -0.144, "growth_tmp": 30.578, "optimum_tmp": 29.638, "optimum_ph": 7.1, "genome_size": 3546146.356, "gc_content": 39.987, "coding_genes": 3356.54, "rRNA16S_genes": 6.191, "tRNA_genes": 76.716, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.034, "range_salinity": 0.5, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.652, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.347, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Acinetobacter", "pragensis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }