{
    "type": "genome",
    "identifier": "GCF_001611975.1",
    "organism": "Haematospirillum jordaniae",
    "title": "Haematospirillum jordaniae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "CDC",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001611975.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04456661",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1549855",
        "species_taxid": "1549855",
        "organism_name": "Haematospirillum jordaniae",
        "infraspecific_name": "strain=H5569",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/04/06",
        "asm_name": "ASM161197v1",
        "asm_submitter": "CDC",
        "gbrs_paired_asm": "GCA_001611975.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/611/975/GCF_001611975.1_ASM161197v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2467625",
        "genome_size_ungapped": "2467625",
        "gc_percent": "55.500000",
        "replicon_count": "3",
        "scaffold_count": "3",
        "contig_count": "3",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001611975.1-RS_2024_12_09",
        "annotation_date": "2024-12-09",
        "total_gene_count": "2307",
        "protein_coding_gene_count": "2204",
        "non_coding_gene_count": "76",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-04-06",
    "dateModified": "2016-04-06",
    "datePublished": "2016-04-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Haematospirillum jordaniae"
        ],
        "sample_taxid": [
            "1549855"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Virginia"
        ],
        "sample_host_location_id": [],
        "data_size": "0.696 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2467625",
        "Number of Sequences": "3",
        "Longest Sequences (bp)": "2131542",
        "N50 (bp)": "2131542",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "55.4",
        "Number of CDSs": "2257",
        "Average Protein Length": "322.2",
        "Coding Ratio (%)": "88.4",
        "Number of rRNAs": "15",
        "Number of tRNAs": "59",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Haematospirillum jordaniae",
                "strain": "strain=H5569",
                "accession": "GCA_001611975.1",
                "taxid": 1549855,
                "species_taxid": 1549855,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 813,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Haematospirillum jordaniae",
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                "accession": "GCA_012102615.1",
                "taxid": 1549855,
                "species_taxid": 1549855,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9816,
                "matched_fragments": 780,
                "total_fragments": 821,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Novispirillum itersonii subsp. itersonii",
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                "accession": "GCA_000381985.1",
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                "relation_to_type": "type",
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                "total_fragments": 821,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_001611975.1",
                "gtdb_species": "s__Haematospirillum jordaniae",
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                "matched_fragments": 813,
                "total_fragments": 821,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Rhodospirillaceae;g__Haematospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.88",
                "min_intra_species_ani": "99.28",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 11,
                "status": "conclusive"
            },
            {
                "accession": "GCF_012102705.1",
                "gtdb_species": "s__Haematospirillum sp012102705",
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                "matched_fragments": 712,
                "total_fragments": 821,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Rhodospirillaceae;g__Haematospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_012102745.1",
                "gtdb_species": "s__Haematospirillum sp012102745",
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                "matched_fragments": 718,
                "total_fragments": 821,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Rhodospirillaceae;g__Haematospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.64",
                "min_intra_species_ani": "99.29",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000381985.1",
                "gtdb_species": "s__Novispirillum itersonii",
                "ani": 76.8919,
                "matched_fragments": 87,
                "total_fragments": 821,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Rhodospirillaceae;g__Novispirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900156605.1",
                "gtdb_species": "s__Insolitispirillum peregrinum",
                "ani": 76.4963,
                "matched_fragments": 65,
                "total_fragments": 821,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Rhodospirillaceae;g__Insolitispirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": 2467623.333,
        "gc_content": 55.474,
        "coding_genes": 2187.0,
        "rRNA16S_genes": 5.0,
        "tRNA_genes": 58.0,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Haematospirillum",
        "jordaniae"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}