{ "type": "genome", "identifier": "GCF_001612945.1", "organism": "Nocardia inohanensis NBRC 100128", "title": "Nocardia inohanensis NBRC 100128", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001612945.1", "bioproject": "PRJNA224116", "biosample": "SAMD00040655", "wgs_master": "BDBK00000000.1", "refseq_category": "reference genome", "taxid": "1210077", "species_taxid": "209246", "organism_name": "Nocardia inohanensis NBRC 100128", "infraspecific_name": "strain=NBRC 100128", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/04/01", "asm_name": "ASM161294v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_001612945.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/612/945/GCF_001612945.1_ASM161294v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8118011", "genome_size_ungapped": "8118011", "gc_percent": "68.000000", "replicon_count": "0", "scaffold_count": "26", "contig_count": "26", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001612945.1-RS_2024_08_12", "annotation_date": "2024-08-12", "total_gene_count": "7493", "protein_coding_gene_count": "7330", "non_coding_gene_count": "73", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-04-01", "dateModified": "2016-04-01", "datePublished": "2016-04-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardia inohanensis NBRC 100128" ], "sample_taxid": [ "1210077" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Mexico" ], "sample_host_location_id": [], "data_size": "2.215 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8118011", "Number of Sequences": "26", "Longest Sequences (bp)": "1313884", "N50 (bp)": "562521", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.8", "Number of CDSs": "7528", "Average Protein Length": "325.1", "Coding Ratio (%)": "90.4", "Number of rRNAs": "5", "Number of tRNAs": "75", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardia inohanensis", "strain": "strain=NBRC 100128", "accession": "GCA_001612945.1", "taxid": 209246, "species_taxid": 209246, 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2694, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia terrae", "strain": "strain=ET3-3", "accession": "GCA_009760405.1", "taxid": 2675851, "species_taxid": 2675851, "relation_to_type": "type", "validated": true, "ani": 83.1926, "matched_fragments": 1750, "total_fragments": 2694, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia niigatensis", "strain": "strain=NBRC 100131", "accession": "GCA_000308655.1", "taxid": 209249, "species_taxid": 209249, "relation_to_type": "type", "validated": true, "ani": 83.104, "matched_fragments": 1591, "total_fragments": 2694, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia crassostreae", "strain": "strain=NBRC 100342", "accession": "GCA_001613405.1", "taxid": 53428, "species_taxid": 53428, "relation_to_type": "type", "validated": true, "ani": 83.0547, "matched_fragments": 1618, "total_fragments": 2694, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia jejuensis", "strain": "strain=NBRC 103114", "accession": "GCA_001613145.1", "taxid": 328049, "species_taxid": 328049, "relation_to_type": "type", "validated": true, "ani": 82.6609, "matched_fragments": 1632, "total_fragments": 2694, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia otitidiscaviarum", "strain": "strain=NCTC1934", "accession": "GCA_900454305.1", "taxid": 1823, "species_taxid": 1823, "relation_to_type": "type", "validated": true, "ani": 82.0904, "matched_fragments": 1487, "total_fragments": 2694, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia otitidiscaviarum", "strain": "strain=NBRC 14405", "accession": "GCA_000308635.1", "taxid": 1823, "species_taxid": 1823, "relation_to_type": "type", "validated": true, "ani": 82.0904, "matched_fragments": 1437, "total_fragments": 2694, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 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