{ "type": "genome", "identifier": "GCF_001613105.1", "organism": "Nocardia pseudobrasiliensis NBRC 108224", "title": "Nocardia pseudobrasiliensis NBRC 108224", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001613105.1", "bioproject": "PRJNA224116", "biosample": "SAMD00040662", "wgs_master": "BDBS00000000.1", "refseq_category": "na", "taxid": "1210086", "species_taxid": "45979", "organism_name": "Nocardia pseudobrasiliensis NBRC 108224", "infraspecific_name": "strain=NBRC 108224", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/04/01", "asm_name": "ASM161310v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_001613105.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/613/105/GCF_001613105.1_ASM161310v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8402979", "genome_size_ungapped": "8402979", "gc_percent": "67.500000", "replicon_count": "0", "scaffold_count": "104", "contig_count": "104", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001613105.1-RS_2024_09_09", "annotation_date": "2024-09-09", "total_gene_count": "8058", "protein_coding_gene_count": "7863", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-04-01", "dateModified": "2016-04-01", "datePublished": "2016-04-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardia pseudobrasiliensis NBRC 108224" ], "sample_taxid": [ "1210086" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "2.299 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 2.31, "strain_heterogeneity": 40.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8402979", "Number of Sequences": "104", "Longest Sequences (bp)": "593934", "N50 (bp)": "174575", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.3", "Number of CDSs": "7961", "Average Protein Length": "310.4", "Coding Ratio (%)": "88.2", "Number of rRNAs": "4", "Number of tRNAs": "59", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardia pseudobrasiliensis", "strain": "strain=NBRC 108224", "accession": "GCA_001613105.1", "taxid": 45979, "species_taxid": 45979, 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"matched_fragments": 1411, "total_fragments": 2752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia transvalensis", "strain": "strain=DSM 43582", "accession": "GCA_014203315.1", "taxid": 37333, "species_taxid": 37333, "relation_to_type": "type", "validated": true, "ani": 81.9945, "matched_fragments": 1413, "total_fragments": 2752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia aobensis", "strain": "strain=NBRC 100429", "accession": "GCA_000308375.1", "taxid": 257277, "species_taxid": 257277, "relation_to_type": "type", "validated": true, "ani": 81.257, "matched_fragments": 1173, "total_fragments": 2752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia mikamii", "strain": "strain=NBRC 108933", "accession": "GCA_001613505.1", "taxid": 508464, "species_taxid": 508464, "relation_to_type": "type", "validated": true, "ani": 81.075, "matched_fragments": 1212, "total_fragments": 2752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia miyunensis", "strain": "strain=NBRC 108239", "accession": "GCA_001613065.1", "taxid": 282684, "species_taxid": 282684, "relation_to_type": "type", "validated": true, "ani": 81.0358, "matched_fragments": 1232, "total_fragments": 2752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia jiangxiensis", "strain": "strain=NBRC 101359", "accession": "GCA_000308615.1", "taxid": 282685, "species_taxid": 282685, "relation_to_type": "type", "validated": true, "ani": 81.0303, "matched_fragments": 1253, "total_fragments": 2752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia coffeae", "strain": "strain=CA2R105", "accession": "GCA_019890715.1", "taxid": 2873381, "species_taxid": 2873381, "relation_to_type": "type", "validated": true, "ani": 80.9448, "matched_fragments": 1279, "total_fragments": 2752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia albiluteola", "strain": "strain=NEAU-G5", "accession": "GCA_018860155.1", "taxid": 2842303, "species_taxid": 2842303, "relation_to_type": "type", "validated": true, "ani": 80.8191, "matched_fragments": 1310, "total_fragments": 2752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia aurantia", "strain": "strain=RB56", "accession": "GCA_009604425.1", "taxid": 2585199, "species_taxid": 2585199, "relation_to_type": "type", "validated": true, "ani": 80.46, "matched_fragments": 1244, "total_fragments": 2752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia beijingensis", "strain": "strain=NBRC 16342", "accession": "GCA_001612785.1", "taxid": 95162, "species_taxid": 95162, "relation_to_type": "type", "validated": true, "ani": 79.7362, "matched_fragments": 1043, "total_fragments": 2752, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia colli", "strain": "strain=CICC 11023", 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