{ "tc_result": [ { "organism_name": "Nocardia jejuensis", "strain": "strain=NBRC 103114", "accession": "GCA_001613145.1", "taxid": 328049, "species_taxid": 328049, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2831, "total_fragments": 2836, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Nocardia seriolae", "strain": "strain=NBRC 15557", "accession": "GCA_007990715.1", "taxid": 37332, "species_taxid": 37332, "relation_to_type": "type", "validated": true, "ani": 82.7481, "matched_fragments": 1464, "total_fragments": 2836, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia yunnanensis", "strain": "strain=CFH S0054", "accession": "GCA_003626895.1", "taxid": 2382165, "species_taxid": 2382165, "relation_to_type": "type", "validated": true, "ani": 82.6792, "matched_fragments": 1602, "total_fragments": 2836, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia concava", "strain": "strain=NBRC 100430", "accession": "GCA_000308815.1", "taxid": 257281, "species_taxid": 257281, "relation_to_type": "type", "validated": true, "ani": 82.6634, "matched_fragments": 1606, "total_fragments": 2836, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia terrae", "strain": "strain=ET3-3", "accession": "GCA_009760405.1", "taxid": 2675851, "species_taxid": 2675851, "relation_to_type": "type", "validated": true, "ani": 82.6392, "matched_fragments": 1616, "total_fragments": 2836, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia yamanashiensis", "strain": "strain=NBRC 100130", "accession": "GCA_001613325.1", "taxid": 209247, "species_taxid": 209247, "relation_to_type": "type", "validated": true, "ani": 82.6201, "matched_fragments": 1695, "total_fragments": 2836, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia niigatensis", "strain": "strain=NBRC 100131", "accession": "GCA_000308655.1", "taxid": 209249, "species_taxid": 209249, "relation_to_type": "type", "validated": true, "ani": 82.5936, "matched_fragments": 1546, "total_fragments": 2836, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia acidivorans", "strain": "strain=NBRC 108247", "accession": "GCA_001625085.1", "taxid": 404580, "species_taxid": 404580, "relation_to_type": "type", "validated": true, "ani": 82.5637, "matched_fragments": 1601, "total_fragments": 2836, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia huaxiensis", "strain": "strain=WCH-YHL-001", "accession": "GCA_013744875.1", "taxid": 2755382, "species_taxid": 2755382, "relation_to_type": "type", "validated": true, "ani": 82.4846, "matched_fragments": 1560, "total_fragments": 2836, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia inohanensis", "strain": "strain=NBRC 100128", "accession": "GCA_001612945.1", "taxid": 209246, "species_taxid": 209246, "relation_to_type": "type", "validated": true, "ani": 82.4598, "matched_fragments": 1649, "total_fragments": 2836, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia acididurans", "strain": "strain=LPG 2", "accession": "GCA_016741815.1", "taxid": 2802282, "species_taxid": 2802282, "relation_to_type": "type", "validated": true, "ani": 82.4534, "matched_fragments": 1611, "total_fragments": 2836, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia crassostreae", "strain": "strain=NBRC 100342", "accession": "GCA_001613405.1", "taxid": 53428, "species_taxid": 53428, "relation_to_type": "type", "validated": true, "ani": 82.379, "matched_fragments": 1480, "total_fragments": 2836, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia otitidiscaviarum", "strain": "strain=NCTC1934", "accession": "GCA_900454305.1", "taxid": 1823, "species_taxid": 1823, "relation_to_type": "type", "validated": true, "ani": 81.6993, "matched_fragments": 1396, "total_fragments": 2836, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia otitidiscaviarum", "strain": "strain=NBRC 14405", "accession": "GCA_000308635.1", "taxid": 1823, "species_taxid": 1823, "relation_to_type": "type", "validated": true, "ani": 81.6871, "matched_fragments": 1381, "total_fragments": 2836, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia uniformis", "strain": "strain=JCM 3224", "accession": "GCA_013004475.1", "taxid": 53432, "species_taxid": 53432, "relation_to_type": "type", "validated": true, "ani": 80.9446, "matched_fragments": 1363, "total_fragments": 2836, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia uniformis", "strain": "strain=NBRC 13702", "accession": "GCA_001613345.1", "taxid": 53432, "species_taxid": 53432, "relation_to_type": "type", "validated": true, "ani": 80.8974, "matched_fragments": 1351, "total_fragments": 2836, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001613145.1", "gtdb_species": "s__Nocardia jejuensis", "ani": 100.0, "matched_fragments": 2831, "total_fragments": 2836, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_018362975.1", "gtdb_species": "s__Nocardia tengchongensis", "ani": 82.7736, "matched_fragments": 1559, "total_fragments": 2836, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007990715.1", "gtdb_species": "s__Nocardia seriolae", "ani": 82.7564, "matched_fragments": 1463, "total_fragments": 2836, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.94", "min_intra_species_ani": "99.87", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.93", "num_clustered_genomes": 20, "status": "-" }, { "accession": "GCF_000308815.1", "gtdb_species": "s__Nocardia concava", "ani": 82.6936, "matched_fragments": 1601, "total_fragments": 2836, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003626895.1", "gtdb_species": "s__Nocardia yunnanensis", "ani": 82.6766, "matched_fragments": 1603, "total_fragments": 2836, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001613325.1", "gtdb_species": "s__Nocardia yamanashiensis", "ani": 82.6153, "matched_fragments": 1696, "total_fragments": 2836, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009760405.1", "gtdb_species": "s__Nocardia terrae", "ani": 82.6116, "matched_fragments": 1620, "total_fragments": 2836, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000308655.1", "gtdb_species": "s__Nocardia niigatensis", "ani": 82.6098, "matched_fragments": 1541, "total_fragments": 2836, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001625085.1", "gtdb_species": "s__Nocardia acidivorans", "ani": 82.5602, "matched_fragments": 1601, "total_fragments": 2836, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013744875.1", "gtdb_species": "s__Nocardia sp013744875", "ani": 82.4876, "matched_fragments": 1559, "total_fragments": 2836, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001612945.1", "gtdb_species": "s__Nocardia inohanensis", "ani": 82.4586, "matched_fragments": 1649, "total_fragments": 2836, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016741815.1", "gtdb_species": "s__Nocardia sp016741815", "ani": 82.4485, "matched_fragments": 1613, "total_fragments": 2836, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001613405.1", "gtdb_species": "s__Nocardia crassostreae", "ani": 82.3541, "matched_fragments": 1484, "total_fragments": 2836, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009649815.1", "gtdb_species": "s__Nocardia sp009649815", "ani": 82.2149, "matched_fragments": 1597, "total_fragments": 2836, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000308635.1", "gtdb_species": "s__Nocardia otitidiscaviarum", "ani": 81.7044, "matched_fragments": 1377, "total_fragments": 2836, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.88", "min_intra_species_ani": "97.41", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.92", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_001613345.1", "gtdb_species": "s__Nocardia uniformis", "ani": 80.8883, "matched_fragments": 1354, "total_fragments": 2836, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000284035.1", "gtdb_species": "s__Nocardia cyriacigeorgica_B", "ani": 80.0295, "matched_fragments": 992, "total_fragments": 2836, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.41", "min_intra_species_ani": "98.27", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.91", "num_clustered_genomes": 5, "status": "-" } ] }