{ "type": "genome", "identifier": "GCF_001613165.1", "organism": "Nocardia mexicana NBRC 108244", "title": "Nocardia mexicana NBRC 108244", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001613165.1", "bioproject": "PRJNA224116", "biosample": "SAMD00018777", "wgs_master": "BDBV00000000.1", "refseq_category": "na", "taxid": "1210089", "species_taxid": "279262", "organism_name": "Nocardia mexicana NBRC 108244", "infraspecific_name": "strain=NBRC 108244", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/04/01", "asm_name": "ASM161316v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_001613165.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/613/165/GCF_001613165.1_ASM161316v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8955593", "genome_size_ungapped": "8955593", "gc_percent": "68.500000", "replicon_count": "0", "scaffold_count": "180", "contig_count": "180", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001613165.1-RS_2024_09_09", "annotation_date": "2024-09-09", "total_gene_count": "8292", "protein_coding_gene_count": "8116", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-04-01", "dateModified": "2016-04-01", "datePublished": "2016-04-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardia mexicana NBRC 108244" ], "sample_taxid": [ "1210089" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Mexico" ], "sample_host_location_id": [], "data_size": "2.446 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 10.65, "strain_heterogeneity": 28.57, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8955593", "Number of Sequences": "180", "Longest Sequences (bp)": "302172", "N50 (bp)": "99278", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.7", "Number of CDSs": "8198", "Average Protein Length": "316.2", "Coding Ratio (%)": "86.8", "Number of rRNAs": "3", "Number of tRNAs": "66", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardia mexicana", "strain": "strain=NBRC 108244", "accession": "GCA_001613165.1", "taxid": 279262, "species_taxid": 279262, 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