{ "type": "genome", "identifier": "GCF_001613225.1", "organism": "Nocardia pseudovaccinii NBRC 100343", "title": "Nocardia pseudovaccinii NBRC 100343", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001613225.1", "bioproject": "PRJNA224116", "biosample": "SAMD00018770", "wgs_master": "BDBY00000000.1", "refseq_category": "reference genome", "taxid": "1210093", "species_taxid": "189540", "organism_name": "Nocardia pseudovaccinii NBRC 100343", "infraspecific_name": "strain=NBRC 100343", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/04/01", "asm_name": "ASM161322v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_001613225.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/613/225/GCF_001613225.1_ASM161322v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9938506", "genome_size_ungapped": "9938506", "gc_percent": "65.500000", "replicon_count": "0", "scaffold_count": "492", "contig_count": "492", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001613225.1-RS_2024_09_09", "annotation_date": "2024-09-09", "total_gene_count": "9329", "protein_coding_gene_count": "9029", "non_coding_gene_count": "66", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-04-01", "dateModified": "2016-04-01", "datePublished": "2016-04-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardia pseudovaccinii NBRC 100343" ], "sample_taxid": [ "1210093" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "NA" ], "sample_host_location_id": [], "data_size": "2.755 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.85, "strain_heterogeneity": 75.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9938506", "Number of Sequences": "492", "Longest Sequences (bp)": "239059", "N50 (bp)": "35813", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.7", "Number of CDSs": "8780", "Average Protein Length": "307.6", "Coding Ratio (%)": "81.5", "Number of rRNAs": "3", "Number of tRNAs": "70", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardia pseudovaccinii", "strain": "strain=NBRC 100343", "accession": "GCA_001613225.1", "taxid": 189540, "species_taxid": 189540, 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"matched_fragments": 1367, "total_fragments": 3064, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia colli", "strain": "strain=CICC 11023", "accession": "GCA_008704205.1", "taxid": 2545717, "species_taxid": 2545717, "relation_to_type": "type", "validated": true, "ani": 81.5672, "matched_fragments": 1443, "total_fragments": 3064, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia lijiangensis", "strain": "strain=NBRC 108240", "accession": "GCA_001613045.1", "taxid": 299618, "species_taxid": 299618, "relation_to_type": "type", "validated": true, "ani": 81.5597, "matched_fragments": 1367, "total_fragments": 3064, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia amikacinitolerans", "strain": "strain=DSM 45539", "accession": "GCA_024172045.1", "taxid": 756689, "species_taxid": 756689, "relation_to_type": "type", "validated": true, "ani": 81.4817, "matched_fragments": 1348, "total_fragments": 3064, 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