{ "tc_result": [ { "organism_name": "Nocardia vermiculata", "strain": "strain=NBRC 100427", "accession": "GCA_001613265.1", "taxid": 257274, "species_taxid": 257274, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2180, "total_fragments": 2187, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Nocardia vermiculata", "strain": "strain=JCM 12354", "accession": "GCA_012396005.1", "taxid": 257274, "species_taxid": 257274, "relation_to_type": "type", "validated": true, "ani": 99.9939, "matched_fragments": 2181, "total_fragments": 2187, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Nocardia aobensis", "strain": "strain=NBRC 100429", "accession": "GCA_000308375.1", "taxid": 257277, "species_taxid": 257277, "relation_to_type": "type", "validated": true, "ani": 83.4259, "matched_fragments": 1362, "total_fragments": 2187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia elegans", "strain": "strain=NBRC 108235", "accession": "GCA_001612845.1", "taxid": 300029, "species_taxid": 300029, "relation_to_type": "type", "validated": true, "ani": 83.3328, "matched_fragments": 1374, "total_fragments": 2187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia africana", "strain": "strain=NBRC 100379", "accession": "GCA_001612635.1", "taxid": 134964, "species_taxid": 134964, "relation_to_type": "type", "validated": true, "ani": 83.2413, "matched_fragments": 1380, "total_fragments": 2187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia kruczakiae", "strain": "strain=NBRC 101016", "accession": "GCA_001612965.1", "taxid": 261477, "species_taxid": 261477, "relation_to_type": "type", "validated": true, "ani": 83.2357, "matched_fragments": 1397, "total_fragments": 2187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia nova", "strain": "strain=NBRC 15556", "accession": "GCA_001613005.1", "taxid": 37330, "species_taxid": 37330, "relation_to_type": "type", "validated": true, "ani": 83.2277, "matched_fragments": 1374, "total_fragments": 2187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia cerradoensis", "strain": "strain=NBRC 101014", "accession": "GCA_000308535.1", "taxid": 85688, "species_taxid": 85688, "relation_to_type": "type", "validated": true, "ani": 83.2152, "matched_fragments": 1350, "total_fragments": 2187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia africana", "strain": "strain=FDAARGOS_1597", "accession": "GCA_020731565.1", "taxid": 134964, "species_taxid": 134964, "relation_to_type": "type", "validated": true, "ani": 83.1978, "matched_fragments": 1359, "total_fragments": 2187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia mikamii", "strain": "strain=NBRC 108933", "accession": "GCA_001613505.1", "taxid": 508464, "species_taxid": 508464, "relation_to_type": "type", "validated": true, "ani": 83.111, "matched_fragments": 1409, "total_fragments": 2187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia veterana", "strain": "strain=NBRC 100344", "accession": "GCA_000308855.1", "taxid": 132249, "species_taxid": 132249, "relation_to_type": "type", "validated": true, "ani": 82.8619, "matched_fragments": 1277, "total_fragments": 2187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia veterana", "strain": "strain=DSM 44445", "accession": "GCA_012396305.1", "taxid": 132249, "species_taxid": 132249, "relation_to_type": "type", "validated": true, "ani": 82.8528, "matched_fragments": 1310, "total_fragments": 2187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia mexicana", "strain": "strain=NBRC 108244", "accession": "GCA_001613165.1", "taxid": 279262, "species_taxid": 279262, "relation_to_type": "type", "validated": true, "ani": 80.3825, "matched_fragments": 1067, "total_fragments": 2187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia miyunensis", "strain": "strain=NBRC 108239", "accession": "GCA_001613065.1", "taxid": 282684, "species_taxid": 282684, "relation_to_type": "type", "validated": true, "ani": 80.0903, "matched_fragments": 1001, "total_fragments": 2187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia coffeae", "strain": "strain=CA2R105", "accession": "GCA_019890715.1", "taxid": 2873381, "species_taxid": 2873381, "relation_to_type": "type", "validated": true, "ani": 80.0218, "matched_fragments": 1058, "total_fragments": 2187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia stercoris", "strain": "strain=NEAU-LL90", "accession": "GCA_003696265.1", "taxid": 2483361, "species_taxid": 2483361, "relation_to_type": "type", "validated": true, "ani": 79.3755, "matched_fragments": 842, "total_fragments": 2187, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001613265.1", "gtdb_species": "s__Nocardia vermiculata", "ani": 100.0, "matched_fragments": 2180, "total_fragments": 2187, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_000308375.1", "gtdb_species": "s__Nocardia aobensis", "ani": 83.4361, "matched_fragments": 1361, "total_fragments": 2187, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia", "ani_circumscription_radius": 95.6988, "mean_intra_species_ani": "98.11", "min_intra_species_ani": "97.03", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.86", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001612845.1", "gtdb_species": "s__Nocardia elegans", "ani": 83.3389, "matched_fragments": 1373, "total_fragments": 2187, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia", "ani_circumscription_radius": 96.9334, "mean_intra_species_ani": "99.79", "min_intra_species_ani": "99.59", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.94", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001613005.1", "gtdb_species": "s__Nocardia nova", "ani": 83.2782, "matched_fragments": 1365, "total_fragments": 2187, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia", "ani_circumscription_radius": 96.9334, "mean_intra_species_ani": "98.75", "min_intra_species_ani": "97.55", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.84", "num_clustered_genomes": 13, "status": "-" }, { "accession": "GCF_001612635.1", "gtdb_species": "s__Nocardia africana", "ani": 83.2408, "matched_fragments": 1380, "total_fragments": 2187, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.93", "min_intra_species_ani": "99.93", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001612965.1", "gtdb_species": "s__Nocardia kruczakiae", "ani": 83.225, "matched_fragments": 1399, "total_fragments": 2187, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia", "ani_circumscription_radius": 95.6988, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000308535.1", "gtdb_species": "s__Nocardia cerradoensis", "ani": 83.2078, "matched_fragments": 1351, "total_fragments": 2187, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia", "ani_circumscription_radius": 95.0231, "mean_intra_species_ani": "99.71", "min_intra_species_ani": "99.43", "mean_intra_species_af": "1.00", "min_intra_species_af": "0.99", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_015354405.1", "gtdb_species": "s__Nocardia sp015354405", "ani": 83.1812, "matched_fragments": 1369, "total_fragments": 2187, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001613505.1", "gtdb_species": "s__Nocardia mikamii", "ani": 83.1184, "matched_fragments": 1407, "total_fragments": 2187, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002933465.1", "gtdb_species": "s__Nocardia nova_B", "ani": 83.0404, "matched_fragments": 1280, "total_fragments": 2187, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.92", "min_intra_species_ani": "99.92", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000523235.1", "gtdb_species": "s__Nocardia nova_A", "ani": 82.9851, "matched_fragments": 1405, "total_fragments": 2187, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000308855.1", "gtdb_species": "s__Nocardia veterana", "ani": 82.8583, "matched_fragments": 1277, "total_fragments": 2187, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_017354515.1", "gtdb_species": "s__Nocardia sp017354515", "ani": 81.0347, "matched_fragments": 730, "total_fragments": 2187, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015477355.1", "gtdb_species": "s__Nocardia blacklockiae", "ani": 80.5041, "matched_fragments": 1125, "total_fragments": 2187, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001613065.1", "gtdb_species": "s__Nocardia miyunensis", "ani": 80.0932, "matched_fragments": 1002, "total_fragments": 2187, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }