{
    "type": "genome",
    "identifier": "GCF_001613385.1",
    "organism": "Nocardia flavorosea NBRC 108225",
    "title": "Nocardia flavorosea NBRC 108225",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "National Institute of Technology and Evaluation",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001613385.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00040650",
        "wgs_master": "BDCG00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1220553",
        "species_taxid": "53429",
        "organism_name": "Nocardia flavorosea NBRC 108225",
        "infraspecific_name": "strain=NBRC 108225",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/04/01",
        "asm_name": "ASM161338v1",
        "asm_submitter": "National Institute of Technology and Evaluation",
        "gbrs_paired_asm": "GCA_001613385.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/613/385/GCF_001613385.1_ASM161338v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "7440171",
        "genome_size_ungapped": "7440171",
        "gc_percent": "67.000000",
        "replicon_count": "0",
        "scaffold_count": "70",
        "contig_count": "70",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001613385.1-RS_2024_08_26",
        "annotation_date": "2024-08-26",
        "total_gene_count": "6844",
        "protein_coding_gene_count": "6649",
        "non_coding_gene_count": "58",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-04-01",
    "dateModified": "2016-04-01",
    "datePublished": "2016-04-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Nocardia flavorosea NBRC 108225"
        ],
        "sample_taxid": [
            "1220553"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:Yunnan Province"
        ],
        "sample_host_location_id": [],
        "data_size": "2.044 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "7440171",
        "Number of Sequences": "70",
        "Longest Sequences (bp)": "730311",
        "N50 (bp)": "354858",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "67.1",
        "Number of CDSs": "6917",
        "Average Protein Length": "307.2",
        "Coding Ratio (%)": "85.7",
        "Number of rRNAs": "3",
        "Number of tRNAs": "61",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Nocardia flavorosea",
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                "species_taxid": 53429,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
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                "total_fragments": 2447,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Nocardia flavorosea",
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                "accession": "GCA_012396035.1",
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                "species_taxid": 53429,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9928,
                "matched_fragments": 2435,
                "total_fragments": 2447,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Nocardia carnea",
                "strain": "strain=NBRC 14403",
                "accession": "GCA_000308515.1",
                "taxid": 37328,
                "species_taxid": 37328,
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                "ani": 92.703,
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                "total_fragments": 2447,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardia speluncae",
                "strain": "strain=NBRC 108251",
                "accession": "GCA_001613245.1",
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                "species_taxid": 419477,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.8083,
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                "total_fragments": 2447,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardia speluncae",
                "strain": "strain=DSM 45078",
                "accession": "GCA_012395985.1",
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                "species_taxid": 419477,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.8049,
                "matched_fragments": 1811,
                "total_fragments": 2447,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardia grenadensis",
                "strain": "strain=NBRC 108939",
                "accession": "GCA_001613445.1",
                "taxid": 931537,
                "species_taxid": 931537,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.9103,
                "matched_fragments": 1351,
                "total_fragments": 2447,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardia brevicatena",
                "strain": "strain=NBRC 12119",
                "accession": "GCA_000308495.1",
                "taxid": 37327,
                "species_taxid": 37327,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.1101,
                "matched_fragments": 975,
                "total_fragments": 2447,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardia thailandica",
                "strain": "strain=NBRC 100428",
                "accession": "GCA_000308795.1",
                "taxid": 257275,
                "species_taxid": 257275,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5705,
                "matched_fragments": 766,
                "total_fragments": 2447,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001613385.1",
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                "ani": 100.0,
                "matched_fragments": 2443,
                "total_fragments": 2447,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000308515.1",
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                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
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                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCF_001613245.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia",
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                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCF_015477805.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_000308775.1",
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                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_ani": "N/A",
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            },
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_000308795.1",
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                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.223,
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        "doubling_h": null,
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        "coding_genes": 6908.619,
        "rRNA16S_genes": 3.166,
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        "sporulation": 0.833,
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        "mesophilic_range_tmp": 1.0,
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        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
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        "coccobacillus_cell_shape": 0.0,
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    },
    "_genome_taxon": [
        "Nocardia",
        "flavorosea",
        "NBRC",
        "108225"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}