{
    "type": "genome",
    "identifier": "GCF_001613545.1",
    "organism": "Terrimicrobium sacchariphilum",
    "title": "Terrimicrobium sacchariphilum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Terrimicrobium sacchariphilum NM-5",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001613545.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00048637",
        "wgs_master": "BDCO00000000.1",
        "refseq_category": "reference genome",
        "taxid": "690879",
        "species_taxid": "690879",
        "organism_name": "Terrimicrobium sacchariphilum",
        "infraspecific_name": "strain=NM-5",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/03/30",
        "asm_name": "ASM161354v1",
        "asm_submitter": "Terrimicrobium sacchariphilum NM-5",
        "gbrs_paired_asm": "GCA_001613545.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/613/545/GCF_001613545.1_ASM161354v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4751807",
        "genome_size_ungapped": "4751807",
        "gc_percent": "60.000000",
        "replicon_count": "0",
        "scaffold_count": "3",
        "contig_count": "3",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001613545.1-RS_2024_08_12",
        "annotation_date": "2024-08-12",
        "total_gene_count": "4222",
        "protein_coding_gene_count": "4145",
        "non_coding_gene_count": "55",
        "pubmed_id": "28751395"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-03-30",
    "dateModified": "2016-03-30",
    "datePublished": "2016-03-30",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Terrimicrobium sacchariphilum"
        ],
        "sample_taxid": [
            "690879"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Jiangxi"
        ],
        "sample_host_location_id": [],
        "data_size": "1.339 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4751807",
        "Number of Sequences": "3",
        "Longest Sequences (bp)": "3763298",
        "N50 (bp)": "3763298",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "60.2",
        "Number of CDSs": "4160",
        "Average Protein Length": "348.8",
        "Coding Ratio (%)": "91.6",
        "Number of rRNAs": "3",
        "Number of tRNAs": "49",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Terrimicrobium sacchariphilum",
                "strain": "strain=NM-5",
                "accession": "GCA_001613545.1",
                "taxid": 690879,
                "species_taxid": 690879,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1582,
                "total_fragments": 1583,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Chthoniobacter flavus",
                "strain": "strain=Ellin428",
                "accession": "GCA_000173075.1",
                "taxid": 191863,
                "species_taxid": 191863,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9191,
                "matched_fragments": 96,
                "total_fragments": 1583,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chthoniobacter flavus",
                "strain": "strain=DSM 22515",
                "accession": "GCA_004341915.1",
                "taxid": 191863,
                "species_taxid": 191863,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8757,
                "matched_fragments": 96,
                "total_fragments": 1583,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Luteolibacter ambystomatis",
                "strain": "strain=32A",
                "accession": "GCA_018137965.1",
                "taxid": 2824561,
                "species_taxid": 2824561,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7229,
                "matched_fragments": 68,
                "total_fragments": 1583,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brevifollis gellanilyticus",
                "strain": "strain=NBRC 108608",
                "accession": "GCA_007992435.1",
                "taxid": 748831,
                "species_taxid": 748831,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.373,
                "matched_fragments": 53,
                "total_fragments": 1583,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseimicrobium gellanilyticum",
                "strain": "strain=DSM 25532",
                "accession": "GCA_003315205.1",
                "taxid": 748857,
                "species_taxid": 748857,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0866,
                "matched_fragments": 68,
                "total_fragments": 1583,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gemmatirosa kalamazoonensis",
                "strain": "strain=KBS708",
                "accession": "GCA_000522985.1",
                "taxid": 861299,
                "species_taxid": 861299,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.1231,
                "matched_fragments": 60,
                "total_fragments": 1583,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Azospirillum melinis",
                "strain": "strain=TMCY 0552",
                "accession": "GCA_017876055.1",
                "taxid": 328839,
                "species_taxid": 328839,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7616,
                "matched_fragments": 63,
                "total_fragments": 1583,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001613545.1",
                "gtdb_species": "s__Terrimicrobium sacchariphilum",
                "ani": 100.0,
                "matched_fragments": 1582,
                "total_fragments": 1583,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Chthoniobacterales;f__Terrimicrobiaceae;g__Terrimicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_003054655.1",
                "gtdb_species": "s__Terrimicrobium sp003054655",
                "ani": 88.2843,
                "matched_fragments": 1120,
                "total_fragments": 1583,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Chthoniobacterales;f__Terrimicrobiaceae;g__Terrimicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017305195.1",
                "gtdb_species": "s__Terrimicrobium sp001897195",
                "ani": 86.8292,
                "matched_fragments": 1106,
                "total_fragments": 1583,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Chthoniobacterales;f__Terrimicrobiaceae;g__Terrimicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.90",
                "min_intra_species_ani": "99.90",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_018402345.1",
                "gtdb_species": "s__UBA967 sp018402345",
                "ani": 77.2939,
                "matched_fragments": 101,
                "total_fragments": 1583,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Chthoniobacterales;f__Terrimicrobiaceae;g__UBA967",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018970255.1",
                "gtdb_species": "s__UBA967 sp018970255",
                "ani": 77.1915,
                "matched_fragments": 123,
                "total_fragments": 1583,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Chthoniobacterales;f__Terrimicrobiaceae;g__UBA967",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015655545.1",
                "gtdb_species": "s__JAATET01 sp015655545",
                "ani": 76.7785,
                "matched_fragments": 134,
                "total_fragments": 1583,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Chthoniobacterales;f__JAATET01;g__JAATET01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_007280915.1",
                "gtdb_species": "s__QYQL01 sp007280915",
                "ani": 76.5908,
                "matched_fragments": 104,
                "total_fragments": 1583,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Chthoniobacterales;f__Terrimicrobiaceae;g__QYQL01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018240025.1",
                "gtdb_species": "s__SZAS-18 sp018240025",
                "ani": 76.3176,
                "matched_fragments": 85,
                "total_fragments": 1583,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Chthoniobacterales;f__UBA10450;g__SZAS-18",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903874975.1",
                "gtdb_species": "s__Chthoniobacter sp903874975",
                "ani": 76.2767,
                "matched_fragments": 83,
                "total_fragments": 1583,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Chthoniobacterales;f__Chthoniobacteraceae;g__Chthoniobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.99",
                "min_intra_species_ani": "97.82",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_009885995.1",
                "gtdb_species": "s__VFJQ01 sp009885995",
                "ani": 76.0853,
                "matched_fragments": 106,
                "total_fragments": 1583,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Chthoniobacterales;f__Chthoniobacteraceae;g__VFJQ01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Terrimicrobium",
        "sacchariphilum"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}