{ "type": "genome", "identifier": "GCF_001618145.1", "organism": "Oceanobacillus damuensis", "title": "Oceanobacillus damuensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Sichuan University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001618145.1", "bioproject": "PRJNA224116", "biosample": "SAMN04387706", "wgs_master": "LQNF00000000.1", "refseq_category": "reference genome", "taxid": "937928", "species_taxid": "937928", "organism_name": "Oceanobacillus damuensis", "infraspecific_name": "strain=PT-20", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/04/08", "asm_name": "ASM161814v1", "asm_submitter": "Sichuan University", "gbrs_paired_asm": "GCA_001618145.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/618/145/GCF_001618145.1_ASM161814v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4118836", "genome_size_ungapped": "4118651", "gc_percent": "39.500000", "replicon_count": "0", "scaffold_count": "73", "contig_count": "79", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001618145.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "4011", "protein_coding_gene_count": "3875", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-04-08", "dateModified": "2016-04-08", "datePublished": "2016-04-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Oceanobacillus damuensis" ], "sample_taxid": [ "937928" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Damu Town, Xinjiang" ], "sample_host_location_id": [], "data_size": "1.169 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4118836", "Number of Sequences": "73", "Longest Sequences (bp)": "320151", "N50 (bp)": "129999", "Gap Ratio (%)": "0.004492", "GCcontent (%)": "39.3", "Number of CDSs": "4014", "Average Protein Length": "282.4", "Coding Ratio (%)": "82.6", "Number of rRNAs": "1", "Number of tRNAs": "55", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Oceanobacillus damuensis", "strain": "strain=PT-20", "accession": "GCA_001618145.1", "taxid": 937928, "species_taxid": 937928, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1334, "total_fragments": 1338, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Oceanobacillus rekensis", "strain": "strain=PT-11", "accession": "GCA_002153375.1", "taxid": 937927, "species_taxid": 937927, "relation_to_type": "type", "validated": true, "ani": 79.548, "matched_fragments": 507, "total_fragments": 1338, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanobacillus massiliensis", "strain": "strain=Ndiop", "accession": "GCA_000285495.1", "taxid": 1465765, "species_taxid": 1465765, "relation_to_type": "type", "validated": true, "ani": 79.0609, "matched_fragments": 374, "total_fragments": 1338, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanobacillus polygoni", "strain": "strain=SA9", "accession": "GCA_008304605.1", "taxid": 1235259, "species_taxid": 1235259, "relation_to_type": "type", "validated": true, "ani": 78.7271, "matched_fragments": 335, "total_fragments": 1338, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanobacillus profundus", "strain": "strain=DSM 18246", "accession": "GCA_003515705.1", "taxid": 372463, "species_taxid": 372463, "relation_to_type": "type", "validated": true, "ani": 78.4901, "matched_fragments": 317, "total_fragments": 1338, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanobacillus profundus", "strain": "strain=CL-MP28", "accession": "GCA_008087205.1", "taxid": 372463, "species_taxid": 372463, "relation_to_type": "type", "validated": true, "ani": 78.4873, "matched_fragments": 318, "total_fragments": 1338, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanobacillus zhaokaii", "strain": "strain=160", "accession": "GCA_003352005.1", "taxid": 2052660, "species_taxid": 2052660, "relation_to_type": "type", "validated": true, "ani": 78.3795, "matched_fragments": 182, "total_fragments": 1338, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanobacillus salinisoli", "strain": "strain=YIM B00359", "accession": "GCA_009733865.1", "taxid": 2678611, "species_taxid": 2678611, "relation_to_type": "type", "validated": true, "ani": 78.0918, "matched_fragments": 182, "total_fragments": 1338, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanobacillus chungangensis", "strain": "strain=CAU 1051", "accession": "GCA_003369565.1", "taxid": 1229152, "species_taxid": 1229152, "relation_to_type": "type", "validated": true, "ani": 77.8298, "matched_fragments": 169, "total_fragments": 1338, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Virgibacillus indicus", "strain": "strain=P2-C2", "accession": "GCA_002266285.1", "taxid": 2024554, "species_taxid": 2024554, "relation_to_type": "type", "validated": true, "ani": 77.6904, "matched_fragments": 190, "total_fragments": 1338, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanobacillus kimchii", "strain": "strain=X50", "accession": "GCA_000340475.1", "taxid": 746691, "species_taxid": 746691, "relation_to_type": "type", "validated": true, "ani": 77.6696, "matched_fragments": 134, "total_fragments": 1338, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Virgibacillus profundi", "strain": "strain=P3-H5", "accession": "GCA_002287375.1", "taxid": 2024555, "species_taxid": 2024555, "relation_to_type": "type", "validated": true, "ani": 77.4827, "matched_fragments": 197, "total_fragments": 1338, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ornithinibacillus contaminans", "strain": "strain=DSM 22953", "accession": "GCA_001038425.2", "taxid": 694055, "species_taxid": 694055, "relation_to_type": "type", "validated": true, "ani": 77.4386, "matched_fragments": 94, "total_fragments": 1338, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanobacillus bengalensis", "strain": "strain=MCCC 1K00260", "accession": "GCA_003628445.1", "taxid": 1435466, "species_taxid": 1435466, 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