{
    "type": "genome",
    "identifier": "GCF_001618685.1",
    "organism": "Geobacillus subterraneus",
    "title": "Geobacillus subterraneus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Kyungpook National University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001618685.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04445793",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "129338",
        "species_taxid": "129338",
        "organism_name": "Geobacillus subterraneus",
        "infraspecific_name": "strain=KCTC3922(T)",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/04/12",
        "asm_name": "ASM161868v1",
        "asm_submitter": "Kyungpook National University",
        "gbrs_paired_asm": "GCA_001618685.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/618/685/GCF_001618685.1_ASM161868v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3474426",
        "genome_size_ungapped": "3474426",
        "gc_percent": "52.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-03-03",
        "total_gene_count": "3492",
        "protein_coding_gene_count": "3240",
        "non_coding_gene_count": "120",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-04-12",
    "dateModified": "2016-04-12",
    "datePublished": "2016-04-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Geobacillus subterraneus"
        ],
        "sample_taxid": [
            "129338"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "0.972 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3474426",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "3474426",
        "N50 (bp)": "3474426",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "52.2",
        "Number of CDSs": "3443",
        "Average Protein Length": "287.0",
        "Coding Ratio (%)": "85.3",
        "Number of rRNAs": "27",
        "Number of tRNAs": "89",
        "Number of CRISPRs": "5"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "species_taxid": 129338,
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                "validated": true,
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                "matched_fragments": 1156,
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                "status": "conclusive"
            },
            {
                "organism_name": "Geobacillus thermodenitrificans subsp. thermodenitrificans",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Geobacillus kaustophilus",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
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            {
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                "validated": true,
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                "matched_fragments": 859,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Geobacillus icigianus",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Geobacillus stearothermophilus",
                "strain": "strain=ATCC 12980",
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                "species_taxid": 1422,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 701,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Geobacillus jurassicus",
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                "accession": "GCA_001544315.1",
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                "species_taxid": 235932,
                "relation_to_type": "type",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Brevibacillus marinus",
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                "accession": "GCA_003963515.1",
                "taxid": 2496837,
                "species_taxid": 2496837,
                "relation_to_type": "type",
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                "ani": 77.7952,
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            }
        ],
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            "contamination": 0.0,
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                "accession": "GCF_001618685.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Geobacillus",
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            {
                "accession": "GCF_014679505.1",
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                "num_clustered_genomes": 3,
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Geobacillus",
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            },
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            },
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
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                "accession": "GCA_001610955.1",
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        ]
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    "_bac2feature": {
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    "_genome_taxon": [
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}