# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_33	LOCUS_00330	sequence1:38857..40209(-)	partial			WP_011948571.1	beta-glucoside-specific PTS transporter subunit IIABC	99.6	72.7	40.9
MGA_62	LOCUS_00620	sequence1:66502..66705(-)	frameshift,internal_stop_codon	66902..66904(-)	66976,66514,66703	WP_011922479.1	sugar O-acetyltransferase	92.5	33.5	61.3
MGA_70	LOCUS_00700	sequence1:74916..80702(-)	partial			WP_011836870.1	ZmpA/ZmpB/ZmpC family metallo-endopeptidase	74.8	47.9	33.7
MGA_71	LOCUS_00710	sequence1:80871..81140(-)	partial			WP_002363448.1	chorismate mutase	97.8	31.0	42.5
MGA_118	LOCUS_01180	sequence1:118955..119269(+)	frameshift		118959	WP_040804636.1	GIY-YIG nuclease family protein	77.9	24.4	72.8
MGA_176	LOCUS_01760	sequence1:180129..180401(+)	partial			WP_001254394.1	YiaA/YiaB family inner membrane protein	73.3	84.6	48.5
MGA_224	LOCUS_02240	sequence1:227624..228010(-)	partial			WP_010921915.1	nucleoside-triphosphate diphosphatase	100.0	37.2	35.9
MGA_239	LOCUS_02390	sequence1:242780..243475(+)	frameshift,internal_stop_codon	243473..243475(+)	243493	WP_012775212.1	ISL3 family transposase	95.7	52.9	88.7
MGA_240	LOCUS_02400	sequence1:243519..244088(+)	frameshift,internal_stop_codon	243473..243475(+)	243493	WP_012775212.1	ISL3 family transposase	100.0	45.2	88.4
MGA_248	LOCUS_02480	sequence1:250822..251394(-)	frameshift		251374	WP_012027645.1	winged helix-turn-helix domain-containing protein	96.3	79.9	75.4
MGA_249	LOCUS_02490	sequence1:251372..251515(-)	frameshift		251377	WP_012027645.1	winged helix-turn-helix domain-containing protein	100.0	20.5	87.2
MGA_289	LOCUS_02890	sequence1:292510..292800(+)	partial			WP_011836998.1	NUDIX hydrolase	94.8	65.9	54.9
MGA_297	LOCUS_02970	sequence1:300122..300394(+)	partial			WP_205010637.1	IS30 family transposase	95.6	27.1	74.4
MGA_298	LOCUS_02980	sequence1:300451..300741(+)	frameshift		300726	WP_088197863.1	IS3-like element ISSag2 family transposase	97.9	25.5	83.0
MGA_299	LOCUS_02990	sequence1:300777..301556(+)	frameshift		300726	WP_088197863.1	IS3-like element ISSag2 family transposase	100.0	70.4	81.1
MGA_300	LOCUS_03000	sequence1:301669..302259(+)	partial			WP_205010637.1	IS30 family transposase	98.0	60.6	77.1
MGA_302	LOCUS_03020	sequence1:302866..303198(+)	frameshift		302755,303175	WP_012775212.1	ISL3 family transposase	97.3	25.6	89.7
MGA_323	LOCUS_03220	sequence1:331310..332089(-)	frameshift		332139	WP_088197863.1	IS3-like element ISSag2 family transposase	100.0	70.4	81.1
MGA_324	LOCUS_03230	sequence1:332125..332415(-)	frameshift		332139	WP_088197863.1	IS3-like element ISSag2 family transposase	97.9	25.5	83.0
MGA_367	LOCUS_03660	sequence1:374223..374546(-)	frameshift		374285	WP_011836579.1	preprotein translocase subunit SecA	84.1	10.7	86.7
MGA_386	LOCUS_03850	sequence1:393227..393517(+)	frameshift		393502	WP_088197863.1	IS3-like element ISSag2 family transposase	97.9	25.5	83.0
MGA_387	LOCUS_03860	sequence1:393553..394332(+)	frameshift		393502	WP_088197863.1	IS3-like element ISSag2 family transposase	100.0	70.4	81.1
MGA_393	LOCUS_03920	sequence1:396694..397575(+)	partial			WP_000475501.1	FtsK/SpoIIIE domain-containing protein	52.9	36.9	32.1
MGA_396	LOCUS_03950	sequence1:399378..400355(+)	frameshift		400301	WP_000219078.1	site-specific integrase	96.0	76.8	63.9
MGA_397	LOCUS_03960	sequence1:400364..400612(+)	frameshift		400301	WP_205010568.1	tyrosine-type recombinase/integrase	82.9	17.8	76.4
MGA_400	LOCUS_03990	sequence1:401907..402137(+)	partial			WP_121836467.1	IS30 family transposase	98.7	23.8	94.7
MGA_412	LOCUS_04110	sequence1:412987..413196(+)	partial			WP_002986681.1	transcriptional regulator Rgg4/ComR	71.0	16.2	49.0
MGA_413	LOCUS_04120	sequence1:413619..413879(-)	internal_stop_codon	413898..413900(-)		WP_001856324.1	hypothetical protein	89.5	39.5	63.6
MGA_414	LOCUS_04130	sequence1:413898..414266(-)	internal_stop_codon	413898..413900(-)		WP_001856324.1	hypothetical protein	74.6	48.2	34.0
MGA_420	LOCUS_04190	sequence1:419496..419822(-)	frameshift		419859	WP_002905347.1	nucleotide exchange factor GrpE	100.0	60.7	88.9
MGA_423	LOCUS_04220	sequence1:421237..421770(-)	partial			WP_002920199.1	DUF2812 domain-containing protein	67.8	67.4	40.6
MGA_427	LOCUS_04260	sequence1:423568..424206(-)	frameshift		424253	WP_000354889.1	PFL family protein	100.0	47.6	95.8
MGA_428	LOCUS_04270	sequence1:424251..424904(-)	frameshift		424253	WP_011837498.1	PFL family protein	100.0	48.8	94.5
MGA_476	LOCUS_04750	sequence1:462909..463523(-)	frameshift		463525	WP_012775339.1	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	100.0	54.0	87.7
MGA_477	LOCUS_04760	sequence1:463466..464041(-)	frameshift		463525	WP_012775339.1	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	89.5	45.5	98.2
MGA_487	LOCUS_04860	sequence1:473356..475779(-)	partial			WP_010989917.1	MucBP domain-containing protein	56.5	37.2	29.8
MGA_491	LOCUS_04900	sequence1:478712..479914(-)	partial			WP_000815035.1	SpaA isopeptide-forming pilin-related protein	53.8	71.7	35.1
MGA_495	LOCUS_04940	sequence1:484722..484985(-)	frameshift,internal_stop_codon	485061..485063(-)	484739,484790	WP_005816675.1	IS200/IS605-like element ISDha13 family transposase	92.0	53.0	66.2
MGA_496	LOCUS_04950	sequence1:485344..485703(+)	partial			WP_011101076.1	tyrosine-type recombinase/integrase	45.4	13.5	44.4
MGA_499	LOCUS_04980	sequence1:487352..487870(-)	frameshift,internal_stop_codon	487953..487955(-)	487898,488010	WP_000339039.1	bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase	92.4	34.1	84.9
MGA_500	LOCUS_04990	sequence1:487816..488754(-)	frameshift,internal_stop_codon	487953..487955(-)	487898,488010	WP_011921996.1	Cof-type HAD-IIB family hydrolase	88.5	59.2	62.7
MGA_513	LOCUS_05120	sequence1:502517..506632(-)	partial			WP_011068088.1	FctA domain-containing protein	38.9	22.3	30.8
MGA_562	LOCUS_05610	sequence1:561191..561601(+)	partial			WP_000160547.1	IS30-like element ISSmi3 family transposase	92.6	32.5	84.9
MGA_563	LOCUS_05620	sequence1:561598..562179(+)	partial			WP_121836467.1	IS30 family transposase	99.5	61.0	85.4
MGA_571	LOCUS_05700	sequence1:569946..570527(-)	partial			WP_121836467.1	IS30 family transposase	99.5	61.0	85.4
MGA_572	LOCUS_05710	sequence1:570524..570934(-)	partial			WP_000160547.1	IS30-like element ISSmi3 family transposase	92.6	32.5	86.5
MGA_579	LOCUS_05780	sequence1:575745..575966(-)	frameshift		575759	WP_012027868.1	penicillin-binding protein PBP2A	89.0	8.7	49.2
MGA_596	LOCUS_05950	sequence1:589958..590095(-)	partial			WP_000831905.1	50S ribosomal protein L34	57.8	59.1	92.3
MGA_626	LOCUS_06250	sequence1:615479..616198(-)	partial			WP_010922334.1	PASTA domain-containing protein	53.1	79.4	40.9
MGA_649	LOCUS_06480	sequence1:642338..642670(+)	frameshift		642646	WP_012775212.1	ISL3 family transposase	97.3	25.6	81.3
MGA_650	LOCUS_06490	sequence1:642887..643321(-)	partial			WP_011836623.1	transporter	100.0	34.9	42.4
MGA_653	LOCUS_06520	sequence1:644079..646055(-)	partial			WP_127742798.1	class III lanthionine synthetase LanKC	48.9	37.8	29.0
MGA_665	LOCUS_06640	sequence1:657735..658529(+)	frameshift		658352	WP_002911107.1	replication-associated recombination protein A	78.4	49.1	88.4
MGA_666	LOCUS_06650	sequence1:658427..659020(+)	frameshift		658355	WP_012775707.1	replication-associated recombination protein A	100.0	46.0	83.2
MGA_673	LOCUS_06720	sequence1:665761..666366(+)	frameshift		666330	WP_000272526.1	UDP-galactopyranose mutase	99.0	54.4	83.4
MGA_674	LOCUS_06730	sequence1:666360..666866(+)	frameshift		666330	WP_000272526.1	UDP-galactopyranose mutase	99.4	45.4	76.6
MGA_686	LOCUS_06850	sequence1:676856..677326(-)	partial			WP_011836364.1	competence type IV pilus minor pilin ComGG	36.5	66.7	44.7
MGA_700	LOCUS_06990	sequence1:686109..686510(-)	partial			WP_012775247.1	DUF3955 domain-containing protein	46.6	39.2	45.2
MGA_712	LOCUS_07110	sequence1:697871..699241(-)	internal_stop_codon	697871..697873(-)		WP_011031376.1	ABC transporter ATP-binding protein	96.5	76.3	23.5
MGA_726	LOCUS_07250	sequence1:716756..717706(-)	partial			WP_003243990.1	lipoprotein	43.4	63.5	27.7
MGA_727	LOCUS_07260	sequence1:717710..721129(-)	partial			WP_011836924.1	ZmpA/ZmpB/ZmpC family metallo-endopeptidase	18.2	11.0	32.7
MGA_739	LOCUS_07380	sequence1:734490..736256(-)	frameshift		736234	WP_012028020.1	glycoside hydrolase family 3 protein	99.5	60.4	83.2
MGA_740	LOCUS_07390	sequence1:736160..737386(-)	frameshift		736234	WP_012028020.1	glycoside hydrolase family 3 protein	94.1	39.7	80.0
MGA_757	LOCUS_07560	sequence1:756102..756440(-)	frameshift		756486	WP_002262444.1	RpiB/LacA/LacB family sugar-phosphate isomerase	98.2	52.4	59.1
MGA_758	LOCUS_07570	sequence1:756430..756720(-)	frameshift		756486	WP_002262444.1	RpiB/LacA/LacB family sugar-phosphate isomerase	82.3	37.6	68.4
MGA_779	LOCUS_07780	sequence1:779484..779669(-)	frameshift		779689	WP_012775416.1	YoaK family protein	95.1	25.6	51.7
MGA_780	LOCUS_07790	sequence1:779621..780154(-)	frameshift		779689	WP_012775416.1	YoaK family protein	88.7	69.2	63.7
MGA_801	LOCUS_07990	sequence1:806634..807266(+)	frameshift		807227	WP_012775464.1	rod shape-determining protein MreC	86.7	65.5	42.9
MGA_802	LOCUS_08000	sequence1:807302..807460(+)	frameshift		807227	WP_012775464.1	rod shape-determining protein MreC	98.1	18.3	62.7
MGA_803	LOCUS_08010	sequence1:807460..807828(+)	frameshift		807819	WP_002894318.1	rod shape-determining protein MreD	88.5	65.1	30.6
MGA_804	LOCUS_08020	sequence1:808057..809112(+)	frameshift		808992	WP_012774880.1	CHAP domain-containing protein	89.2	79.4	51.3
MGA_805	LOCUS_08030	sequence1:809010..809237(+)	frameshift		808995	WP_000727024.1	CHAP domain-containing protein	97.3	18.3	67.1
MGA_809	LOCUS_08070	sequence1:812572..812862(+)	frameshift,internal_stop_codon	812860..812862(+)	812988	WP_029172398.1	IS200/IS605-like element ISSsu4 family transposase	100.0	62.3	75.0
MGA_863	LOCUS_08610	sequence1:857857..858507(+)	frameshift		858498	WP_148255720.1	IS630 family transposase	76.9	47.6	49.4
MGA_864	LOCUS_08620	sequence1:858539..858976(+)	frameshift		858438	WP_115265112.1	IS630 family transposase	98.6	40.9	83.9
MGA_867	LOCUS_08640	sequence1:865846..866313(+)	partial			WP_115265112.1	IS630 family transposase	92.3	40.9	49.7
MGA_869	LOCUS_08660	sequence1:867808..867993(+)	frameshift		867975	WP_115265112.1	IS630 family transposase	91.8	16.0	87.5
MGA_870	LOCUS_08670	sequence1:867990..868316(+)	frameshift		867975	WP_115265112.1	IS630 family transposase	98.1	30.3	75.5
MGA_886	LOCUS_08830	sequence1:890045..890761(+)	partial			WP_076996129.1	IS1182 family transposase	91.6	45.4	71.6
MGA_928	LOCUS_09250	sequence1:917487..917879(+)	partial			WP_226319307.1	hypothetical protein	41.5	76.1	61.1
MGA_931	LOCUS_09280	sequence1:918334..918924(+)	partial			WP_001064589.1	DUF1642 domain-containing protein	52.0	61.8	38.3
MGA_932	LOCUS_09290	sequence1:918917..919513(+)	partial			WP_001019148.1	DUF1642 domain-containing protein	73.7	77.4	34.4
MGA_938	LOCUS_09350	sequence1:921678..922268(+)	partial			WP_010922072.1	DNA modification methylase	66.3	33.5	63.1
MGA_940	LOCUS_09370	sequence1:923033..923473(+)	partial			WP_002383816.1	helix-turn-helix domain-containing protein	68.5	83.7	36.2
MGA_943	LOCUS_09400	sequence1:926352..927920(+)	partial			WP_010922076.1	phage minor capsid protein	72.4	76.1	57.1
MGA_961	LOCUS_09580	sequence1:939958..940656(+)	partial			WP_010922450.1	hyaluronoglucosaminidase	30.2	18.9	61.4
MGA_963	LOCUS_09600	sequence1:941061..942317(+)	partial			WP_010922092.1	gp58-like family protein	26.6	18.0	34.2
MGA_969	LOCUS_09660	sequence1:944144..944752(+)	partial			WP_000227060.1	hypothetical protein	55.4	70.9	40.4
MGA_972	LOCUS_09690	sequence1:945742..946476(+)	partial			WP_010922095.1	glucosaminidase domain-containing protein	100.0	61.0	61.1
MGA_988	LOCUS_09850	sequence1:961827..962531(-)	partial			WP_002263669.1	WYL domain-containing protein	89.7	66.4	27.6
MGA_1026	LOCUS_10230	sequence1:1004209..1007037(+)	partial			WP_011082576.1	accumulation-associated protein Aap	60.6	45.8	35.1
MGA_1027	LOCUS_10240	sequence1:1007077..1007241(+)	partial			WP_002263362.1	endonuclease MutS2	100.0	7.0	90.7
MGA_1030	LOCUS_10270	sequence1:1008550..1009053(-)	frameshift		1009216,1009219	WP_001086430.1	AraC family transcriptional regulator	98.2	53.1	50.0
MGA_1031	LOCUS_10280	sequence1:1009127..1009429(-)	frameshift		1009216,1009219	WP_001086430.1	AraC family transcriptional regulator	66.0	21.4	45.5
MGA_1032	LOCUS_10290	sequence1:1009561..1009818(-)	frameshift		1009832	WP_010989913.1	OFA family MFS transporter	94.1	19.7	62.5
MGA_1033	LOCUS_10300	sequence1:1009728..1010786(-)	frameshift		1009832	WP_010989913.1	OFA family MFS transporter	92.9	80.3	57.8
MGA_1036	LOCUS_10330	sequence1:1014295..1014789(-)	partial			WP_011921822.1	peptide-methionine (R)-S-oxide reductase MsrB	98.8	51.9	66.0
MGA_1039	LOCUS_10360	sequence1:1015946..1016428(-)	partial			WP_010964877.1	MarR family transcriptional regulator	74.4	83.2	48.7
MGA_1067	LOCUS_10640	sequence1:1049117..1049563(+)	partial			WP_002894431.1	YhcH/YjgK/YiaL family protein	59.5	58.0	35.2
MGA_1074	LOCUS_10710	sequence1:1056520..1057284(+)	frameshift		1057203	WP_001065303.1	ABC transporter permease	89.8	80.6	46.1
MGA_1099	LOCUS_10960	sequence1:1081845..1082387(+)	frameshift		1082321	WP_014554396.1	PTS sugar transporter subunit IIC	85.6	36.5	46.9
MGA_1100	LOCUS_10970	sequence1:1082393..1083103(+)	frameshift		1082318	WP_003243273.1	PTS lichenan transporter subunit IIC	98.3	51.3	46.1
MGA_1109	LOCUS_11060	sequence1:1092764..1093072(+)	partial			WP_012775696.1	preprotein translocase subunit YajC	78.4	74.8	77.5
MGA_1125	LOCUS_11220	sequence1:1114579..1115301(+)	frameshift,internal_stop_codon	1115239..1115241(+)	1115238	WP_141768142.1	IS1182 family transposase	92.1	38.6	80.5
MGA_1126	LOCUS_11230	sequence1:1115298..1115852(+)	frameshift,internal_stop_codon	1115851..1115853(+)	1115241	WP_141768142.1	IS1182 family transposase	100.0	32.1	75.5
MGA_1127	LOCUS_11240	sequence1:1115958..1116140(+)	internal_stop_codon	1115850..1115852(+)		WP_141768142.1	IS1182 family transposase	93.3	9.8	75.0
MGA_1128	LOCUS_11250	sequence1:1116157..1116678(+)	frameshift		1116672	WP_148255714.1	IS630 family transposase	97.1	48.1	47.0
MGA_1129	LOCUS_11260	sequence1:1116710..1117219(+)	frameshift		1116609	WP_115265112.1	IS630 family transposase	98.8	47.7	80.2
MGA_1143	LOCUS_11400	sequence1:1130266..1130787(+)	frameshift		1130772,1130980,1130863	WP_148255720.1	IS630 family transposase	96.0	47.6	48.2
MGA_1144	LOCUS_11410	sequence1:1130894..1131256(+)	frameshift		1130980,1130718,1130863	WP_115265112.1	IS630 family transposase	75.8	26.0	81.3
MGA_1151	LOCUS_11470	sequence1:1141585..1141872(-)	frameshift		1141915	WP_205010637.1	IS30 family transposase	98.9	29.7	83.0
MGA_1152	LOCUS_11480	sequence1:1141904..1142548(-)	frameshift		1141915	WP_205010637.1	IS30 family transposase	99.5	67.2	73.7
MGA_1175	LOCUS_11710	sequence1:1162788..1163603(-)	partial			WP_004083337.1	radical SAM protein	86.0	51.1	30.9
MGA_1182	LOCUS_11780	sequence1:1169256..1169897(+)	frameshift		1169807	WP_000219401.1	NAD-dependent deacetylase	85.9	63.0	69.6
MGA_1183	LOCUS_11790	sequence1:1169843..1170154(+)	frameshift		1169804	WP_010922343.1	NAD-dependent deacetylase	92.2	32.4	66.3
MGA_1186	LOCUS_11820	sequence1:1172038..1172388(+)	partial			WP_011922679.1	VOC family protein	60.3	54.3	60.0
MGA_1190	LOCUS_11860	sequence1:1177648..1178514(+)	frameshift		1178490	WP_000974899.1	HAD-IIB family hydrolase	97.2	60.9	50.7
MGA_1191	LOCUS_11870	sequence1:1178501..1179034(+)	frameshift		1178490	WP_002901047.1	Cof-type HAD-IIB family hydrolase	100.0	38.5	62.2
MGA_1229	LOCUS_12250	sequence1:1220595..1221290(+)	frameshift,internal_stop_codon	1221288..1221290(+)	1221308	WP_012775212.1	ISL3 family transposase	95.7	52.9	88.7
MGA_1230	LOCUS_12260	sequence1:1221334..1221903(+)	frameshift,internal_stop_codon	1221288..1221290(+)	1221308	WP_093649644.1	ISL3 family transposase	99.5	29.7	80.9
MGA_1235	LOCUS_12310	sequence1:1226302..1227765(+)	frameshift		1227582	WP_011836526.1	ABC transporter ATP-binding protein	87.9	72.8	69.2
MGA_1236	LOCUS_12320	sequence1:1227657..1228067(+)	frameshift		1227585	WP_011836526.1	ABC transporter ATP-binding protein	100.0	23.1	83.1
MGA_1287	LOCUS_12830	sequence1:1277194..1277955(-)	partial			WP_001829860.1	serine protease	77.9	70.2	28.6
MGA_1311	LOCUS_13070	sequence1:1300594..1302273(+)	partial			WP_001263850.1	SP_1767 family glycosyltransferase	53.0	74.9	54.0
MGA_1320	LOCUS_13160	sequence1:1314806..1315147(-)	frameshift		1315224	WP_012027287.1	peptidylprolyl isomerase	82.3	34.8	74.2
MGA_1321	LOCUS_13170	sequence1:1315144..1315602(-)	frameshift		1315224	WP_012027287.1	peptidylprolyl isomerase	82.9	48.7	61.5
MGA_1340	LOCUS_13360	sequence1:1333748..1333930(+)	partial			WP_000564846.1	ISAs1-like element IS1548 family transposase	83.3	13.3	90.0
MGA_1343	LOCUS_13390	sequence1:1337614..1338072(+)	partial			WP_002288299.1	PTS fructose transporter subunit IIABC	96.1	22.6	34.9
MGA_1345	LOCUS_13410	sequence1:1338419..1339465(+)	frameshift,internal_stop_codon	1338397..1338399(+)	1338456	WP_012870407.1	PTS fructose transporter subunit IIBC	93.1	70.9	44.2
MGA_1378	LOCUS_13740	sequence1:1384672..1385085(+)	frameshift		1384592,1384601,1385030	WP_002322009.1	protein rep	86.9	38.9	46.7
MGA_1379	LOCUS_13750	sequence1:1385141..1385344(+)	frameshift		1385028	WP_011222005.1	protein rep	98.5	21.0	40.3
MGA_1385	LOCUS_13810	sequence1:1391401..1391595(+)	frameshift		1391526	WP_001245373.1	ABC transporter permease	64.1	10.3	61.0
MGA_1387	LOCUS_13830	sequence1:1393286..1396960(+)	partial			WP_002352221.1	cell surface antigen I/II	53.5	43.7	26.7
MGA_1402	LOCUS_13980	sequence1:1410506..1410715(+)	frameshift		1410712	WP_004298830.1	catabolite control protein A	100.0	20.7	100.0
MGA_1403	LOCUS_13990	sequence1:1410715..1411509(+)	frameshift		1410712	WP_004298830.1	catabolite control protein A	100.0	79.0	90.9
MGA_1421	LOCUS_14170	sequence1:1433978..1434358(+)	partial			WP_000459236.1	hypothetical protein	97.6	22.2	35.2
MGA_1425	LOCUS_14210	sequence1:1437789..1438412(+)	partial			WP_003818529.1	TetR/AcrR family transcriptional regulator	76.8	74.1	28.7
MGA_1433	LOCUS_14290	sequence1:1447836..1447994(+)	partial			WP_011285473.1	ABC transporter ATP-binding protein	100.0	23.4	59.6
MGA_1447	LOCUS_14430	sequence1:1459780..1460031(-)	frameshift,internal_stop_codon	1459780..1459782(-)	1459653	WP_011475483.1	IS200/IS605 family transposase	100.0	53.5	75.9
MGA_1487	LOCUS_14830	sequence1:1497687..1498301(+)	partial			WP_011836712.1	type II CAAX endopeptidase family protein	61.3	59.9	33.6
MGA_1503	LOCUS_14990	sequence1:1513324..1514031(-)	partial			WP_184006649.1	IS1182 family transposase	92.8	45.4	76.1
MGA_1507	LOCUS_15030	sequence1:1519393..1519683(+)	frameshift		1519668	WP_088197863.1	IS3-like element ISSag2 family transposase	97.9	25.5	83.0
MGA_1508	LOCUS_15040	sequence1:1520051..1520497(+)	frameshift		1519973	WP_088197863.1	IS3-like element ISSag2 family transposase	100.0	40.2	85.8
MGA_1509	LOCUS_15050	sequence1:1520748..1521275(+)	partial			WP_000074567.1	ABC transporter ATP-binding protein	98.9	57.3	33.9
MGA_1519	LOCUS_15150	sequence1:1530108..1530455(-)	frameshift		1530505	WP_011922108.1	PLP-dependent aminotransferase family protein	98.3	27.0	43.4
MGA_1520	LOCUS_15160	sequence1:1530452..1531375(-)	frameshift		1530505	WP_011922108.1	PLP-dependent aminotransferase family protein	94.1	69.0	76.1
MGA_1530	LOCUS_15260	sequence1:1539602..1540201(-)	frameshift,internal_stop_codon	1540266..1540268(-)	1540247	WP_012775212.1	ISL3 family transposase	100.0	43.5	80.4
MGA_1531	LOCUS_15270	sequence1:1540266..1540961(-)	frameshift,internal_stop_codon	1540266..1540268(-)	1540247	WP_012775212.1	ISL3 family transposase	95.7	52.9	89.1
MGA_1540	LOCUS_15360	sequence1:1548263..1548505(+)	frameshift,internal_stop_codon	1548179..1548181(+)	1548057,1548493	WP_011108038.1	ISAs1-like element ISBthe4 family transposase	65.0	13.1	61.5
MGA_1541	LOCUS_15370	sequence1:1548462..1549013(+)	frameshift		1548490	WP_000564846.1	ISAs1-like element IS1548 family transposase	95.1	48.0	46.4
MGA_1598	LOCUS_15940	sequence1:1604741..1608460(+)	partial			WP_002900650.1	GBS Bsp-like repeat-containing protein	69.1	59.2	47.1
MGA_1599	LOCUS_15950	sequence1:1608558..1609403(-)	frameshift		1609456,1608580	WP_012775212.1	ISL3 family transposase	98.9	66.5	88.1
MGA_1600	LOCUS_15960	sequence1:1609400..1609747(-)	frameshift		1609456	WP_012775212.1	ISL3 family transposase	84.3	23.2	87.6
MGA_1617	LOCUS_16130	sequence1:1629491..1630792(+)	partial			WP_011837189.1	rhamnan synthesis F family protein	52.2	22.8	51.1
MGA_1673	LOCUS_16690	sequence1:1698024..1698548(+)	partial			WP_162098249.1	glycosyltransferase	75.3	26.3	53.4
MGA_1674	LOCUS_16700	sequence1:1698485..1699012(+)	frameshift		1698432,1698404	WP_000362087.1	glycosyltransferase family 2 protein	83.4	43.6	32.9
MGA_1678	LOCUS_16740	sequence1:1702057..1703154(+)	partial			WP_011118864.1	glycosyltransferase	78.1	66.7	25.6
MGA_1716	LOCUS_17120	sequence1:1746014..1746385(-)	frameshift		1746136	WP_000160552.1	IS30 family transposase	67.5	21.4	85.5
MGA_1722	LOCUS_17180	sequence1:1752336..1753724(+)	partial			WP_000157953.1	sucrose-specific PTS transporter subunit IIBC	99.1	71.8	49.8
MGA_1749	LOCUS_17450	sequence1:1780543..1784070(+)	partial			WP_000700513.1	pneumococcal-type histidine triad protein	50.7	53.3	56.1
MGA_1810	LOCUS_18060	sequence1:1844419..1844796(-)	partial			WP_002935390.1	ECF transporter S component	100.0	66.1	68.0
MGA_1816	LOCUS_18120	sequence1:1848800..1849357(+)	partial			WP_011837425.1	hypothetical protein	95.7	71.1	32.2
MGA_1823	LOCUS_18190	sequence1:1855242..1856120(+)	frameshift		1855979	WP_000841525.1	ABC transporter ATP-binding protein	93.2	47.0	73.2
MGA_1824	LOCUS_18200	sequence1:1856032..1856988(+)	frameshift		1855982	WP_000841525.1	ABC transporter ATP-binding protein	99.4	54.6	82.3
MGA_1830	LOCUS_18260	sequence1:1865080..1870029(+)	partial			WP_147628756.1	MucBP domain-containing protein	80.8	49.6	24.0
MGA_1844	LOCUS_18400	sequence1:1884471..1885040(-)	frameshift,internal_stop_codon	1885084..1885086(-)	1885065	WP_012775212.1	ISL3 family transposase	100.0	45.2	88.4
MGA_1845	LOCUS_18410	sequence1:1885084..1885302(-)	frameshift,internal_stop_codon	1885084..1885086(-)	1885065	WP_012775212.1	ISL3 family transposase	66.7	11.5	83.3
MGA_1847	LOCUS_18430	sequence1:1886602..1894560(+)	partial			WP_011836786.1	CshA/CshB family fibrillar adhesin-related protein	81.4	73.7	36.0
MGA_1854	LOCUS_18500	sequence1:1905710..1906090(-)	frameshift		1905710	WP_012775212.1	ISL3 family transposase	81.0	24.4	80.4
MGA_1855	LOCUS_18510	sequence1:1906504..1906812(+)	partial			WP_025079793.1	Eco57I restriction-modification methylase domain-containing protein	90.2	6.2	53.3
MGA_1859	LOCUS_18550	sequence1:1909088..1909867(-)	frameshift		1909917	WP_088197863.1	IS3-like element ISSag2 family transposase	100.0	70.4	81.1
MGA_1860	LOCUS_18560	sequence1:1909903..1910193(-)	frameshift		1909917	WP_088197863.1	IS3-like element ISSag2 family transposase	97.9	25.5	83.0
MGA_1865	LOCUS_18610	sequence1:1914070..1915179(+)	partial			WP_005903247.1	acyl-CoA dehydrogenase family protein	97.8	57.4	27.9
MGA_1874	LOCUS_18700	sequence1:1923148..1923567(-)	partial			WP_000160547.1	IS30-like element ISSmi3 family transposase	88.5	31.7	87.0
MGA_1881	LOCUS_18770	sequence1:1929166..1929945(-)	frameshift		1929995	WP_088197863.1	IS3-like element ISSag2 family transposase	100.0	70.4	79.9
MGA_1882	LOCUS_18780	sequence1:1929981..1930271(-)	frameshift		1929995	WP_088197863.1	IS3-like element ISSag2 family transposase	97.9	25.5	83.0
MGA_1884	LOCUS_18800	sequence1:1931319..1931585(+)	partial			WP_001037440.1	membrane protein	95.5	22.5	42.9
MGA_1897	LOCUS_18930	sequence1:1943247..1943888(+)	partial			WP_167493974.1	antibiotic biosynthesis monooxygenase	77.9	72.3	28.1
MGA_1908	LOCUS_19040	sequence1:1956498..1957118(+)	frameshift		1957109	WP_012775102.1	sensor histidine kinase	99.0	65.2	57.4
MGA_1909	LOCUS_19050	sequence1:1957157..1957435(+)	frameshift		1957109	WP_012775102.1	sensor histidine kinase	98.9	29.1	64.8
MGA_1920	LOCUS_19160	sequence1:1969214..1969627(-)	partial			WP_012775625.1	DUF6287 domain-containing protein	60.6	33.3	49.4
MGA_1953	LOCUS_19490	sequence1:2005828..2008314(-)	partial			WP_010905155.1	SpaA isopeptide-forming pilin-related protein	66.5	26.9	23.7
MGA_1960	LOCUS_19560	sequence1:2015931..2016611(-)	partial			WP_011986620.1	BMC domain-containing protein	84.5	67.2	36.8
MGA_1997	LOCUS_19930	sequence1:2058326..2059114(-)	partial			WP_003592665.1	MurR/RpiR family transcriptional regulator	79.8	72.3	20.7
MGA_1998	LOCUS_19940	sequence1:2059256..2060377(-)	partial			WP_002266940.1	prolyl oligopeptidase family serine peptidase	89.5	75.0	28.1
MGA_1999	LOCUS_19950	sequence1:2060497..2060787(+)	frameshift		2060772	WP_088197863.1	IS3-like element ISSag2 family transposase	97.9	25.5	83.0
MGA_2000	LOCUS_19960	sequence1:2060823..2061602(+)	frameshift		2060772	WP_088197863.1	IS3-like element ISSag2 family transposase	100.0	70.4	81.1
MGA_2004	LOCUS_20000	sequence1:2064239..2064463(+)	frameshift		2064460	WP_000149454.1	glycoside hydrolase family 3 N-terminal domain-containing protein	100.0	12.4	36.5
MGA_2005	LOCUS_20010	sequence1:2064552..2065934(+)	frameshift		2064460	WP_012775581.1	glycoside hydrolase family 3 N-terminal domain-containing protein	98.7	80.4	38.4
MGA_2007	LOCUS_20030	sequence1:2068766..2069059(+)	frameshift		2069041	WP_010905331.1	beta-phosphoglucomutase	93.8	41.2	47.3
MGA_2008	LOCUS_20040	sequence1:2069137..2069430(+)	frameshift		2069029	WP_011476249.1	beta-phosphoglucomutase	92.8	40.8	35.2
MGA_2012	LOCUS_20080	sequence1:2072696..2073391(+)	frameshift,internal_stop_codon	2073389..2073391(+)	2073409	WP_012775212.1	ISL3 family transposase	95.7	52.9	88.7
MGA_2013	LOCUS_20090	sequence1:2073435..2074004(+)	frameshift,internal_stop_codon	2073389..2073391(+)	2073409	WP_012775212.1	ISL3 family transposase	100.0	45.2	88.4
MGA_2015	LOCUS_20110	sequence1:2074642..2075091(-)	frameshift		2075126	WP_002934974.1	ATP-dependent Clp protease ATP-binding subunit ClpX	100.0	36.5	86.6
MGA_2016	LOCUS_20120	sequence1:2074974..2075870(-)	frameshift		2075129	WP_002934974.1	ATP-dependent Clp protease ATP-binding subunit ClpX	87.6	64.0	90.4
MGA_2022	LOCUS_20180	sequence1:2080968..2082323(-)	partial			WP_012066536.1	carbohydrate ABC transporter permease	46.6	74.3	29.0
MGA_2023	LOCUS_20190	sequence1:2082333..2083007(-)	frameshift		2083006	WP_012582590.1	sugar ABC transporter permease	98.2	76.6	33.8
MGA_2028	LOCUS_20240	sequence1:2089540..2092242(-)	partial			WP_004082478.1	beta-glucosidase	31.2	41.5	36.3
MGA_2030	LOCUS_20260	sequence1:2093688..2094884(+)	partial			WP_002355307.1	AraC family transcriptional regulator	24.9	34.1	36.4
MGA_2033	LOCUS_20290	sequence1:2097398..2098036(+)	partial			WP_015944392.1	helix-turn-helix transcriptional regulator	39.2	39.9	39.8
MGA_2061	LOCUS_20570	sequence1:2130326..2131060(-)	partial			WP_010922095.1	glucosaminidase domain-containing protein	100.0	61.0	61.1
MGA_2064	LOCUS_20600	sequence1:2132050..2132658(-)	partial			WP_000227060.1	hypothetical protein	55.4	70.9	39.5
MGA_2070	LOCUS_20660	sequence1:2134485..2135741(-)	partial			WP_010922092.1	gp58-like family protein	26.6	18.0	34.2
MGA_2072	LOCUS_20680	sequence1:2136146..2136844(-)	partial			WP_010922450.1	hyaluronoglucosaminidase	30.2	18.9	61.4
MGA_2073	LOCUS_20690	sequence1:2136841..2137344(-)	frameshift		2137376	WP_010922451.1	phage tail spike protein	99.4	24.5	36.1
MGA_2075	LOCUS_20710	sequence1:2137670..2138653(-)	frameshift		2137690	WP_010922451.1	phage tail spike protein	97.9	51.4	45.4
MGA_2103	LOCUS_20990	sequence1:2154304..2154909(-)	partial			WP_001019148.1	DUF1642 domain-containing protein	72.6	77.4	35.8
MGA_2104	LOCUS_21000	sequence1:2154902..2155492(-)	partial			WP_001064589.1	DUF1642 domain-containing protein	52.0	61.8	38.3
MGA_2136	LOCUS_21320	sequence1:2171480..2171656(-)	partial			WP_000048054.1	30S ribosomal protein S21	74.1	74.1	100.0
MGA_2139	LOCUS_21350	sequence1:2173189..2173491(-)	partial			WP_002935569.1	NUDIX hydrolase	99.0	48.3	69.7
MGA_2141	LOCUS_21370	sequence1:2174014..2174304(-)	internal_stop_codon	2174482..2174484(-)		WP_011948347.1	ABC transporter ATP-binding protein	95.8	16.5	45.7
MGA_2142	LOCUS_21380	sequence1:2174482..2175609(-)	internal_stop_codon	2174482..2174484(-)		WP_011948104.1	ABC transporter ATP-binding protein	89.1	60.5	18.7
MGA_2148	LOCUS_21440	sequence1:2180885..2181127(+)	partial			WP_002326704.1	IS982-like element ISEfm1 family transposase	78.8	20.9	46.0
MGA_2158	LOCUS_21540	sequence1:2188994..2189275(-)	frameshift		2189291	WP_093958851.1	SAG1250 family conjugative relaxase	78.5	11.6	57.5
MGA_2161	LOCUS_21570	sequence1:2190833..2191102(-)	frameshift		2191107	WP_002935570.1	thioesterase	94.4	34.1	56.0
MGA_2162	LOCUS_21580	sequence1:2191084..2191575(-)	frameshift		2191107	WP_002935570.1	thioesterase	92.0	61.0	69.3
MGA_2182	LOCUS_21780	sequence1:2214067..2214888(-)	frameshift		2215007	WP_011922805.1	GTPase ObgE	100.0	62.5	90.5
MGA_2183	LOCUS_21790	sequence1:2214915..2215412(-)	frameshift		2215007	WP_000061648.1	GTPase ObgE	75.2	28.4	89.5
MGA_2192	LOCUS_21880	sequence1:2227196..2227975(-)	frameshift		2228025	WP_088197863.1	IS3-like element ISSag2 family transposase	100.0	70.4	81.1
MGA_2193	LOCUS_21890	sequence1:2228011..2228301(-)	frameshift		2228025	WP_088197863.1	IS3-like element ISSag2 family transposase	97.9	25.5	83.0
MGA_2203	LOCUS_21990	sequence1:2240465..2241199(-)	partial			WP_002858308.1	ABC-type lipopolysaccharide transporter PglK	88.1	39.5	27.1
MGA_2204	LOCUS_22000	sequence1:2241351..2241722(+)	frameshift		2241719	WP_205010637.1	IS30 family transposase	100.0	38.8	75.6
MGA_2205	LOCUS_22010	sequence1:2241751..2241969(+)	frameshift		2241719	WP_205010637.1	IS30 family transposase	72.2	16.4	73.1
MGA_2209	LOCUS_22050	sequence1:2245166..2246206(-)	frameshift		2246226	WP_093958851.1	SAG1250 family conjugative relaxase	95.7	52.8	61.9
MGA_2210	LOCUS_22060	sequence1:2246327..2246641(-)	partial			WP_000048064.1	DUF5945 family protein	91.3	73.6	51.6
MGA_2212	LOCUS_22080	sequence1:2246990..2247307(-)	partial			WP_012775532.1	toprim domain-containing protein	99.0	29.1	72.1
MGA_2215	LOCUS_22110	sequence1:2248671..2249519(-)	partial			WP_045611992.1	ATP-binding protein	100.0	53.8	56.7
MGA_2221	LOCUS_22170	sequence1:2258703..2259464(-)	frameshift,internal_stop_codon	2259546..2259548(-)	2259669	WP_010921895.1	ISAs1-like element IS1548 family transposase	99.2	68.4	49.2
MGA_2223	LOCUS_22190	sequence1:2259879..2260646(-)	frameshift		2260759	WP_000167699.1	GbpC/Spa domain-containing protein	95.3	14.8	83.5
MGA_2224	LOCUS_22200	sequence1:2260535..2262079(-)	frameshift		2260759	WP_000167699.1	GbpC/Spa domain-containing protein	85.6	26.9	68.9
MGA_2227	LOCUS_22230	sequence1:2263805..2266900(-)	partial			WP_000656702.1	phage tail tip lysozyme	61.8	68.3	81.3
MGA_2256	LOCUS_22520	sequence1:2293057..2293413(-)	frameshift		2293486	WP_012027218.1	type I 3-dehydroquinate dehydratase	99.2	52.2	81.2
MGA_2257	LOCUS_22530	sequence1:2293460..2293732(-)	frameshift		2293486	WP_012027218.1	type I 3-dehydroquinate dehydratase	91.1	36.6	67.1
MGA_2260	LOCUS_22560	sequence1:2297387..2298082(+)	frameshift,internal_stop_codon	2298080..2298082(+)	2298100	WP_012775212.1	ISL3 family transposase	95.7	52.9	88.7
MGA_2261	LOCUS_22570	sequence1:2298126..2298695(+)	frameshift,internal_stop_codon	2298080..2298082(+)	2298100	WP_012775212.1	ISL3 family transposase	100.0	45.2	88.4
MGA_2262	LOCUS_22580	sequence1:2298834..2301824(-)	partial			WP_000278319.1	CshA/CshB family fibrillar adhesin-related protein	57.8	11.9	25.5
MGA_2263	LOCUS_22590	sequence1:2301857..2302639(-)	frameshift		2302628,2302613,2301877,2302604,2301886	WP_000489015.1	YSIRK signal domain/LPXTG anchor domain surface protein	74.2	20.6	32.9
MGA_2264	LOCUS_22600	sequence1:2302599..2304308(-)	frameshift,internal_stop_codon	2304226..2304228(-),2304205..2304207(-)	2304192,2302613,2304300,2302631,2304234,2302604	WP_000489015.1	YSIRK signal domain/LPXTG anchor domain surface protein	81.0	42.4	32.0
MGA_2281	LOCUS_22770	sequence2:4380..5057(+)	partial			WP_011222005.1	protein rep	99.6	74.0	42.8
MGA_2286	LOCUS_22820	sequence3:1731..2180(+)	frameshift		1708	WP_000475501.1	FtsK/SpoIIIE domain-containing protein	91.9	32.3	27.8
MGA_2290	LOCUS_22860	sequence3:4633..5931(+)	partial			WP_000475501.1	FtsK/SpoIIIE domain-containing protein	54.6	56.0	26.0