{ "type": "genome", "identifier": "GCF_001623565.1", "organism": "Streptococcus marmotae", "title": "Streptococcus marmotae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute for Communicable Disease Control and Prevention, China CDC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001623565.1", "bioproject": "PRJNA224116", "biosample": "SAMN04592763", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1825069", "species_taxid": "1825069", "organism_name": "Streptococcus marmotae", "infraspecific_name": "strain=HTS5", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/04/19", "asm_name": "ASM162356v1", "asm_submitter": "National Institute for Communicable Disease Control and Prevention, China CDC", "gbrs_paired_asm": "GCA_001623565.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/623/565/GCF_001623565.1_ASM162356v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2322791", "genome_size_ungapped": "2322791", "gc_percent": "41.000000", "replicon_count": "3", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-03", "total_gene_count": "2282", "protein_coding_gene_count": "2101", "non_coding_gene_count": "74", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-04-19", "dateModified": "2016-04-19", "datePublished": "2016-04-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptococcus marmotae" ], "sample_taxid": [ "1825069" ], "sample_host_organism": [ "Marmota himalayana" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Qinghai-Tibet Plateau" ], "sample_host_location_id": [], "data_size": "0.653 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2322791", "Number of Sequences": "3", "Longest Sequences (bp)": "2309282", "N50 (bp)": "2309282", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "40.9", "Number of CDSs": "2286", "Average Protein Length": "289.8", "Coding Ratio (%)": "85.6", "Number of rRNAs": "12", "Number of tRNAs": "58", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus marmotae", "strain": "strain=HTS5", "accession": "GCA_001623565.1", "taxid": 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