{ "type": "genome", "identifier": "GCF_001623875.1", "organism": "Clostridium magnum DSM 2767", "title": "Clostridium magnum DSM 2767", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Goettingen Genomics Laboratory", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001623875.1", "bioproject": "PRJNA224116", "biosample": "SAMN04621187", "wgs_master": "LWAE00000000.1", "refseq_category": "na", "taxid": "1121326", "species_taxid": "33954", "organism_name": "Clostridium magnum DSM 2767", "infraspecific_name": "strain=DSM 2767", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/04/19", "asm_name": "ASM162387v1", "asm_submitter": "Goettingen Genomics Laboratory", "gbrs_paired_asm": "GCA_001623875.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/623/875/GCF_001623875.1_ASM162387v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6634930", "genome_size_ungapped": "6634930", "gc_percent": "32.000000", "replicon_count": "0", "scaffold_count": "25", "contig_count": "25", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001623875.1-RS_2024_04_12", "annotation_date": "2024-04-12", "total_gene_count": "6439", "protein_coding_gene_count": "6047", "non_coding_gene_count": "225", "pubmed_id": "27284147" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-04-19", "dateModified": "2016-04-19", "datePublished": "2016-04-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Clostridium magnum DSM 2767" ], "sample_taxid": [ "1121326" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Thailand: Bangkok" ], "sample_host_location_id": [], "data_size": "1.822 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6634930", "Number of Sequences": "25", "Longest Sequences (bp)": "1557441", "N50 (bp)": "740872", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "32.1", "Number of CDSs": "6287", "Average Protein Length": "288.7", "Coding Ratio (%)": "82.1", "Number of rRNAs": "73", "Number of tRNAs": "126", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Clostridium magnum", "strain": "strain=DSM 2767", "accession": "GCA_001623875.1", "taxid": 33954, "species_taxid": 33954, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2198, 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"strain=P21", "accession": "GCA_012926525.1", "taxid": 2716538, "species_taxid": 2716538, "relation_to_type": "type", "validated": true, "ani": 79.187, "matched_fragments": 563, "total_fragments": 2200, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium autoethanogenum", "strain": "strain=DSM 10061", "accession": "GCA_000484505.2", "taxid": 84023, "species_taxid": 84023, "relation_to_type": "suspected-type", "validated": true, "ani": 79.0249, "matched_fragments": 361, "total_fragments": 2200, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium kluyveri", "strain": "strain=NBRC 12016", "accession": "GCA_000010265.1", "taxid": 1534, "species_taxid": 1534, "relation_to_type": "type", "validated": true, "ani": 77.9331, "matched_fragments": 245, "total_fragments": 2200, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium kluyveri", "strain": "strain=DSM 555", "accession": "GCA_000016505.1", 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"matched_fragments": 145, "total_fragments": 2200, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium chrysemydis", "strain": "strain=PT", "accession": "GCA_015234215.1", "taxid": 2665504, "species_taxid": 2665504, "relation_to_type": "type", "validated": true, "ani": 76.0398, "matched_fragments": 132, "total_fragments": 2200, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium celatum", "strain": "strain=DSM 1785", "accession": "GCA_000320405.1", "taxid": 36834, "species_taxid": 36834, "relation_to_type": "type", "validated": true, "ani": 75.8653, "matched_fragments": 148, "total_fragments": 2200, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001623875.1", "gtdb_species": "s__Clostridium_AM magnum", "ani": 100.0, "matched_fragments": 2198, "total_fragments": 2200, "gtdb_taxonomy": 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