{
    "type": "genome",
    "identifier": "GCF_001632285.1",
    "organism": "Moraxella catarrhalis",
    "title": "Moraxella catarrhalis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "TAILORED-Treatment project",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001632285.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04606841",
        "wgs_master": "LWAH00000000.1",
        "refseq_category": "na",
        "taxid": "480",
        "species_taxid": "480",
        "organism_name": "Moraxella catarrhalis",
        "infraspecific_name": "strain=CCUG 353",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/04/26",
        "asm_name": "ASM163228v1",
        "asm_submitter": "TAILORED-Treatment project",
        "gbrs_paired_asm": "GCA_001632285.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/632/285/GCF_001632285.1_ASM163228v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1885013",
        "genome_size_ungapped": "1883974",
        "gc_percent": "41.500000",
        "replicon_count": "0",
        "scaffold_count": "18",
        "contig_count": "18",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001632285.1-RS_2024_11_26",
        "annotation_date": "2024-11-26",
        "total_gene_count": "1741",
        "protein_coding_gene_count": "1657",
        "non_coding_gene_count": "51",
        "pubmed_id": "27313296"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-04-26",
    "dateModified": "2016-04-26",
    "datePublished": "2016-04-26",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Moraxella catarrhalis"
        ],
        "sample_taxid": [
            "480"
        ],
        "sample_host_organism": [
            "Unknown"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "Unknown"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Unknown"
        ],
        "sample_host_location_id": [],
        "data_size": "0.528 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1885013",
        "Number of Sequences": "18",
        "Longest Sequences (bp)": "457892",
        "N50 (bp)": "290242",
        "Gap Ratio (%)": "0.055119",
        "GCcontent (%)": "41.5",
        "Number of CDSs": "1696",
        "Average Protein Length": "317.3",
        "Coding Ratio (%)": "85.6",
        "Number of rRNAs": "3",
        "Number of tRNAs": "44",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Moraxella catarrhalis",
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                "accession": "GCA_001632285.1",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Moraxella catarrhalis",
                "strain": "strain=NCTC11020",
                "accession": "GCA_900476075.1",
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                "species_taxid": 480,
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                "ani": 99.9889,
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                "total_fragments": 620,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Moraxella canis",
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                "accession": "GCA_002014965.1",
                "taxid": 90239,
                "species_taxid": 90239,
                "relation_to_type": "type",
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                "total_fragments": 620,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Moraxella porci",
                "strain": "strain=CCUG 54912",
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                "species_taxid": 1288392,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4532,
                "matched_fragments": 225,
                "total_fragments": 620,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Moraxella cuniculi",
                "strain": "strain=NCTC10297",
                "accession": "GCA_900637105.1",
                "taxid": 34061,
                "species_taxid": 34061,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2224,
                "matched_fragments": 225,
                "total_fragments": 620,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Moraxella cuniculi",
                "strain": "strain=CCUG 2154",
                "accession": "GCA_002015175.1",
                "taxid": 34061,
                "species_taxid": 34061,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1822,
                "matched_fragments": 225,
                "total_fragments": 620,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Moraxella pluranimalium",
                "strain": "strain=CCUG 54913",
                "accession": "GCA_002014825.1",
                "taxid": 470453,
                "species_taxid": 470453,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1226,
                "matched_fragments": 227,
                "total_fragments": 620,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Moraxella nasovis",
                "strain": "strain=ZY201115",
                "accession": "GCA_022701215.1",
                "taxid": 2904121,
                "species_taxid": 2904121,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6146,
                "matched_fragments": 137,
                "total_fragments": 620,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001632285.1",
                "gtdb_species": "s__Moraxella catarrhalis",
                "ani": 100.0,
                "matched_fragments": 620,
                "total_fragments": 620,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.72",
                "min_intra_species_ani": "95.96",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 200,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001656295.1",
                "gtdb_species": "s__Moraxella catarrhalis_C",
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                "matched_fragments": 535,
                "total_fragments": 620,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.44",
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                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_002014765.1",
                "gtdb_species": "s__Moraxella_C lincolnii",
                "ani": 84.1654,
                "matched_fragments": 136,
                "total_fragments": 620,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002014965.1",
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                "matched_fragments": 474,
                "total_fragments": 620,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella",
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                "status": "-"
            },
            {
                "accession": "GCF_002014855.1",
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            },
            {
                "accession": "GCF_002014825.1",
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                "total_fragments": 620,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900156515.1",
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                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
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        "cell_diameter": -0.004,
        "cell_length": 0.117,
        "doubling_h": null,
        "growth_tmp": 36.0,
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        "genome_size": 1905126.923,
        "gc_content": 41.6,
        "coding_genes": 1686.909,
        "rRNA16S_genes": 4.0,
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        "gram_stain": 0.0,
        "sporulation": 0.0,
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        "range_salinity": null,
        "facultative_respiration": 0.0,
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        "mesophilic_range_tmp": 1.0,
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        "bacillus_cell_shape": 0.0,
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        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
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    },
    "_genome_taxon": [
        "Moraxella",
        "catarrhalis"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}