{
    "type": "genome",
    "identifier": "GCF_001634285.1",
    "organism": "Anoxybacteroides amylolyticum",
    "title": "Anoxybacteroides amylolyticum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Los Alamos National Laboratory",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001634285.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04570556",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "294699",
        "species_taxid": "294699",
        "organism_name": "Anoxybacteroides amylolyticum",
        "infraspecific_name": "strain=DSM 15939",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/04/29",
        "asm_name": "ASM163428v1",
        "asm_submitter": "Los Alamos National Laboratory",
        "gbrs_paired_asm": "GCA_001634285.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/634/285/GCF_001634285.1_ASM163428v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3158269",
        "genome_size_ungapped": "3158269",
        "gc_percent": "43.500000",
        "replicon_count": "3",
        "scaffold_count": "3",
        "contig_count": "3",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001634285.1-RS_2024_12_29",
        "annotation_date": "2024-12-29",
        "total_gene_count": "3348",
        "protein_coding_gene_count": "3136",
        "non_coding_gene_count": "108",
        "pubmed_id": "16682297"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-04-29",
    "dateModified": "2016-04-29",
    "datePublished": "2016-04-29",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Anoxybacteroides amylolyticum"
        ],
        "sample_taxid": [
            "294699"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Antarctica: Mount Rittmann"
        ],
        "sample_host_location_id": [],
        "data_size": "0.888 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3158269",
        "Number of Sequences": "3",
        "Longest Sequences (bp)": "2834744",
        "N50 (bp)": "2834744",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "43.6",
        "Number of CDSs": "3264",
        "Average Protein Length": "281.6",
        "Coding Ratio (%)": "87.3",
        "Number of rRNAs": "20",
        "Number of tRNAs": "82",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Anoxybacillus amylolyticus",
                "strain": "strain=DSM 15939",
                "accession": "GCA_001634285.1",
                "taxid": 294699,
                "species_taxid": 294699,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1049,
                "total_fragments": 1051,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Anoxybacillus voinovskiensis",
                "strain": "strain=DSM 17075",
                "accession": "GCA_014196205.1",
                "taxid": 230470,
                "species_taxid": 230470,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.4947,
                "matched_fragments": 841,
                "total_fragments": 1051,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anoxybacillus voinovskiensis",
                "strain": "strain=JCM 12111",
                "accession": "GCA_014646615.1",
                "taxid": 230470,
                "species_taxid": 230470,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.4109,
                "matched_fragments": 836,
                "total_fragments": 1051,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anoxybacillus tepidamans",
                "strain": "strain=DSM 16325",
                "accession": "GCA_014201465.1",
                "taxid": 265948,
                "species_taxid": 265948,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.4012,
                "matched_fragments": 659,
                "total_fragments": 1051,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anoxybacillus kestanbolensis",
                "strain": "strain=NCIMB 13971",
                "accession": "GCA_023653015.1",
                "taxid": 227476,
                "species_taxid": 227476,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.6771,
                "matched_fragments": 324,
                "total_fragments": 1051,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anoxybacillus kamchatkensis",
                "strain": "strain=DSM 14988",
                "accession": "GCA_013761015.1",
                "taxid": 196180,
                "species_taxid": 196180,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4849,
                "matched_fragments": 305,
                "total_fragments": 1051,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus licheniformis",
                "strain": "strain=DSM 13",
                "accession": "GCA_022630555.1",
                "taxid": 1402,
                "species_taxid": 1402,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0615,
                "matched_fragments": 52,
                "total_fragments": 1051,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anoxybacillus caldiproteolyticus",
                "strain": "strain=DSM 15730",
                "accession": "GCA_013761245.1",
                "taxid": 247480,
                "species_taxid": 247480,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5327,
                "matched_fragments": 415,
                "total_fragments": 1051,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Parageobacillus toebii",
                "strain": "strain=NBRC 107807",
                "accession": "GCA_001598935.1",
                "taxid": 153151,
                "species_taxid": 153151,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2078,
                "matched_fragments": 353,
                "total_fragments": 1051,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Geobacillus thermodenitrificans subsp. thermodenitrificans",
                "strain": "strain=DSM 465",
                "accession": "GCA_000496575.1",
                "taxid": 1511749,
                "species_taxid": 33940,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2321,
                "matched_fragments": 211,
                "total_fragments": 1051,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001634285.1",
                "gtdb_species": "s__Anoxybacillus_A amylolyticus",
                "ani": 100.0,
                "matched_fragments": 1048,
                "total_fragments": 1051,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Anoxybacillus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_014196205.1",
                "gtdb_species": "s__Anoxybacillus_A voinovskiensis",
                "ani": 90.4947,
                "matched_fragments": 841,
                "total_fragments": 1051,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Anoxybacillus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_014201465.1",
                "gtdb_species": "s__Anoxybacillus_A tepidamans",
                "ani": 83.3969,
                "matched_fragments": 660,
                "total_fragments": 1051,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Anoxybacillus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001187595.1",
                "gtdb_species": "s__Anoxybacillus gonensis",
                "ani": 80.1698,
                "matched_fragments": 326,
                "total_fragments": 1051,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Anoxybacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.51",
                "min_intra_species_ani": "96.49",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_000833605.1",
                "gtdb_species": "s__Anoxybacillus ayderensis",
                "ani": 80.1428,
                "matched_fragments": 338,
                "total_fragments": 1051,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Anoxybacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.55",
                "min_intra_species_ani": "97.17",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_000620165.1",
                "gtdb_species": "s__Anoxybacillus_A tepidamans_A",
                "ani": 79.0362,
                "matched_fragments": 471,
                "total_fragments": 1051,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Anoxybacillus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_011761475.1",
                "gtdb_species": "s__Saccharococcus thermophilus",
                "ani": 78.9151,
                "matched_fragments": 355,
                "total_fragments": 1051,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Saccharococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003259935.1",
                "gtdb_species": "s__Anoxybacillus_B vitaminiphilus",
                "ani": 78.7227,
                "matched_fragments": 309,
                "total_fragments": 1051,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Anoxybacillus_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003688615.2",
                "gtdb_species": "s__Parageobacillus toebii",
                "ani": 78.6625,
                "matched_fragments": 362,
                "total_fragments": 1051,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Parageobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.34",
                "min_intra_species_ani": "97.52",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 15,
                "status": "-"
            },
            {
                "accession": "GCF_013761245.1",
                "gtdb_species": "s__Anoxybacillus_C caldiproteolyticus",
                "ani": 78.5228,
                "matched_fragments": 416,
                "total_fragments": 1051,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Anoxybacillus_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.29",
                "min_intra_species_ani": "99.25",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_001655645.1",
                "gtdb_species": "s__Parageobacillus thermoglucosidasius_A",
                "ani": 78.1049,
                "matched_fragments": 316,
                "total_fragments": 1051,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Parageobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000445995.2",
                "gtdb_species": "s__Geobacillus sp000445995",
                "ani": 77.9707,
                "matched_fragments": 224,
                "total_fragments": 1051,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Geobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000496575.1",
                "gtdb_species": "s__Geobacillus thermodenitrificans",
                "ani": 77.2053,
                "matched_fragments": 213,
                "total_fragments": 1051,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Geobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.33",
                "min_intra_species_ani": "99.10",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 12,
                "status": "-"
            },
            {
                "accession": "GCF_008710145.1",
                "gtdb_species": "s__Bacillus_BD endozanthoxylicus",
                "ani": 76.2574,
                "matched_fragments": 50,
                "total_fragments": 1051,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Bacillus_BD",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Anoxybacteroides",
        "amylolyticum"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}