{
    "type": "genome",
    "identifier": "GCF_001636015.1",
    "organism": "Moraxella ovis",
    "title": "Moraxella ovis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Missouri - Columbia",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001636015.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN03455375",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "29433",
        "species_taxid": "29433",
        "organism_name": "Moraxella ovis",
        "infraspecific_name": "strain=199/55",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/05/02",
        "asm_name": "ASM163601v1",
        "asm_submitter": "University of Missouri - Columbia",
        "gbrs_paired_asm": "GCA_001636015.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/636/015/GCF_001636015.1_ASM163601v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2306095",
        "genome_size_ungapped": "2306095",
        "gc_percent": "45.500000",
        "replicon_count": "2",
        "scaffold_count": "2",
        "contig_count": "2",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001636015.1-RS_2024_12_09",
        "annotation_date": "2024-12-09",
        "total_gene_count": "2265",
        "protein_coding_gene_count": "2142",
        "non_coding_gene_count": "65",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-05-02",
    "dateModified": "2016-05-02",
    "datePublished": "2016-05-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Moraxella ovis"
        ],
        "sample_taxid": [
            "29433"
        ],
        "sample_host_organism": [
            "Bos taurus"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Norway"
        ],
        "sample_host_location_id": [],
        "data_size": "0.650 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2306095",
        "Number of Sequences": "2",
        "Longest Sequences (bp)": "2265514",
        "N50 (bp)": "2265514",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "45.3",
        "Number of CDSs": "2212",
        "Average Protein Length": "303.6",
        "Coding Ratio (%)": "87.4",
        "Number of rRNAs": "12",
        "Number of tRNAs": "49",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Moraxella ovis",
                "strain": "strain=199/55",
                "accession": "GCA_001636015.1",
                "taxid": 29433,
                "species_taxid": 29433,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 767,
                "total_fragments": 768,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Moraxella ovis",
                "strain": "strain=NCTC11227",
                "accession": "GCA_900453105.1",
                "taxid": 29433,
                "species_taxid": 29433,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9971,
                "matched_fragments": 766,
                "total_fragments": 768,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Moraxella bovoculi",
                "strain": "strain=237",
                "accession": "GCA_000696305.2",
                "taxid": 386891,
                "species_taxid": 386891,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.9597,
                "matched_fragments": 608,
                "total_fragments": 768,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Moraxella caprae",
                "strain": "strain=NCTC12877",
                "accession": "GCA_900453285.1",
                "taxid": 90240,
                "species_taxid": 90240,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.5597,
                "matched_fragments": 291,
                "total_fragments": 768,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Moraxella caprae",
                "strain": "strain=DSM 19149",
                "accession": "GCA_000426885.1",
                "taxid": 90240,
                "species_taxid": 90240,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.3268,
                "matched_fragments": 285,
                "total_fragments": 768,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Moraxella lacunata",
                "strain": "strain=CCUG 4441",
                "accession": "GCA_002027545.1",
                "taxid": 477,
                "species_taxid": 477,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 83.0469,
                "matched_fragments": 281,
                "total_fragments": 768,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Moraxella lacunata",
                "strain": "strain=NBRC 102154",
                "accession": "GCA_001591245.1",
                "taxid": 477,
                "species_taxid": 477,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 82.9639,
                "matched_fragments": 251,
                "total_fragments": 768,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Moraxella caviae",
                "strain": "strain=NCTC10293",
                "accession": "GCA_900453175.1",
                "taxid": 34060,
                "species_taxid": 34060,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9516,
                "matched_fragments": 272,
                "total_fragments": 768,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Moraxella nasovis",
                "strain": "strain=ZY201115",
                "accession": "GCA_022701215.1",
                "taxid": 2904121,
                "species_taxid": 2904121,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6541,
                "matched_fragments": 199,
                "total_fragments": 768,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Moraxella caviae",
                "strain": "strain=CCUG 355",
                "accession": "GCA_002014985.1",
                "taxid": 34060,
                "species_taxid": 34060,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5453,
                "matched_fragments": 248,
                "total_fragments": 768,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Moraxella porci",
                "strain": "strain=CCUG 54912",
                "accession": "GCA_002014855.1",
                "taxid": 1288392,
                "species_taxid": 1288392,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3248,
                "matched_fragments": 196,
                "total_fragments": 768,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Psychrobacter communis",
                "strain": "strain=Sa4CVA2",
                "accession": "GCA_014836505.1",
                "taxid": 2762238,
                "species_taxid": 2762238,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.666,
                "matched_fragments": 54,
                "total_fragments": 768,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001636015.1",
                "gtdb_species": "s__Moraxella ovis",
                "ani": 100.0,
                "matched_fragments": 766,
                "total_fragments": 768,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella",
                "ani_circumscription_radius": 95.978,
                "mean_intra_species_ani": "97.95",
                "min_intra_species_ani": "96.93",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 8,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000696305.2",
                "gtdb_species": "s__Moraxella bovoculi",
                "ani": 95.9597,
                "matched_fragments": 608,
                "total_fragments": 768,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella",
                "ani_circumscription_radius": 95.978,
                "mean_intra_species_ani": "98.49",
                "min_intra_species_ani": "98.41",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_000426885.1",
                "gtdb_species": "s__Moraxella caprae",
                "ani": 85.3711,
                "matched_fragments": 283,
                "total_fragments": 768,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella",
                "ani_circumscription_radius": 95.6695,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002014975.1",
                "gtdb_species": "s__Moraxella bovis",
                "ani": 84.8344,
                "matched_fragments": 281,
                "total_fragments": 768,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella",
                "ani_circumscription_radius": 95.6695,
                "mean_intra_species_ani": "98.79",
                "min_intra_species_ani": "98.38",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_002027555.1",
                "gtdb_species": "s__Moraxella equi",
                "ani": 83.832,
                "matched_fragments": 270,
                "total_fragments": 768,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900453205.1",
                "gtdb_species": "s__Moraxella lacunata_B",
                "ani": 83.7681,
                "matched_fragments": 294,
                "total_fragments": 768,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002027545.1",
                "gtdb_species": "s__Moraxella lacunata",
                "ani": 83.0988,
                "matched_fragments": 279,
                "total_fragments": 768,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.28",
                "min_intra_species_ani": "95.16",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCF_001679005.1",
                "gtdb_species": "s__Moraxella nonliquefaciens",
                "ani": 80.0528,
                "matched_fragments": 220,
                "total_fragments": 768,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.13",
                "min_intra_species_ani": "98.18",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_002014985.1",
                "gtdb_species": "s__Moraxella caviae",
                "ani": 78.5453,
                "matched_fragments": 248,
                "total_fragments": 768,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.91",
                "min_intra_species_ani": "99.82",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_002014965.1",
                "gtdb_species": "s__Moraxella canis",
                "ani": 78.3572,
                "matched_fragments": 164,
                "total_fragments": 768,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.14",
                "min_intra_species_ani": "96.86",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_002014855.1",
                "gtdb_species": "s__Moraxella porci",
                "ani": 78.3448,
                "matched_fragments": 195,
                "total_fragments": 768,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.21",
                "min_intra_species_ani": "96.21",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900156515.1",
                "gtdb_species": "s__Moraxella cuniculi",
                "ani": 78.2071,
                "matched_fragments": 165,
                "total_fragments": 768,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.10",
                "min_intra_species_ani": "98.21",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.004,
        "cell_length": 0.117,
        "doubling_h": null,
        "growth_tmp": 35.0,
        "optimum_tmp": 34.125,
        "optimum_ph": null,
        "genome_size": 2306096.0,
        "gc_content": 43.457,
        "coding_genes": 2022.0,
        "rRNA16S_genes": 4.0,
        "tRNA_genes": 49.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Moraxella",
        "ovis"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}