{ "type": "genome", "identifier": "GCF_001637185.1", "organism": "Flavobacterium fryxellicola", "title": "Flavobacterium fryxellicola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001637185.1", "bioproject": "PRJNA224116", "biosample": "SAMN04574069", "wgs_master": "LVJE00000000.1", "refseq_category": "na", "taxid": "249352", "species_taxid": "249352", "organism_name": "Flavobacterium fryxellicola", "infraspecific_name": "strain=DSM 16209", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/05/05", "asm_name": "ASM163718v1", "asm_submitter": "Korea University", "gbrs_paired_asm": "GCA_001637185.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/637/185/GCF_001637185.1_ASM163718v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3721009", "genome_size_ungapped": "3721009", "gc_percent": "34.500000", "replicon_count": "0", "scaffold_count": "49", "contig_count": "49", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001637185.1-RS_2024_05_17", "annotation_date": "2024-05-17", "total_gene_count": "3279", "protein_coding_gene_count": "3198", "non_coding_gene_count": "47", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-05-05", "dateModified": "2016-05-05", "datePublished": "2016-05-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium fryxellicola" ], "sample_taxid": [ "249352" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica: Lake Fryxell" ], "sample_host_location_id": [], "data_size": "1.044 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3721009", "Number of Sequences": "49", "Longest Sequences (bp)": "565474", "N50 (bp)": "260369", "Gap Ratio (%)": "0.000107", "GCcontent (%)": "34.6", "Number of CDSs": "3182", "Average Protein Length": "329.4", "Coding Ratio (%)": "84.5", "Number of rRNAs": "2", "Number of tRNAs": "42", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium fryxellicola", "strain": "strain=DSM 16209", "accession": "GCA_001637185.1", "taxid": 249352, "species_taxid": 249352, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1214, "total_fragments": 1216, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium fryxellicola", "strain": "strain=DSM 16209", "accession": "GCA_900143245.1", "taxid": 249352, "species_taxid": 249352, "relation_to_type": "type", "validated": true, "ani": 99.9954, "matched_fragments": 1206, "total_fragments": 1216, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium xanthum", "strain": "strain=DSM 3661", "accession": "GCA_900142695.1", "taxid": 69322, "species_taxid": 69322, "relation_to_type": "type", "validated": true, "ani": 91.7227, "matched_fragments": 1001, "total_fragments": 1216, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium omnivorum", "strain": "strain=CGMCC 1.2747", "accession": "GCA_900099915.1", "taxid": 178355, "species_taxid": 178355, "relation_to_type": "type", "validated": true, "ani": 89.5694, "matched_fragments": 934, "total_fragments": 1216, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sandaracinum", "strain": "strain=LB-D12", "accession": "GCA_004349135.1", "taxid": 2541733, "species_taxid": 2541733, "relation_to_type": "type", "validated": true, "ani": 87.6342, "matched_fragments": 935, "total_fragments": 1216, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium petrolei", "strain": "strain=Kopri-42", "accession": "GCA_003314435.2", "taxid": 2259594, "species_taxid": 2259594, "relation_to_type": "type", "validated": true, "ani": 82.7672, "matched_fragments": 776, "total_fragments": 1216, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium limicola", "strain": "strain=DSM 15094", "accession": "GCA_003634755.1", "taxid": 180441, "species_taxid": 180441, "relation_to_type": "type", "validated": true, "ani": 82.7201, "matched_fragments": 733, "total_fragments": 1216, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium taihuense", "strain": "strain=NAS39", "accession": "GCA_019351435.1", "taxid": 2857508, "species_taxid": 2857508, "relation_to_type": "type", "validated": true, "ani": 78.5283, "matched_fragments": 420, "total_fragments": 1216, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium panacis", "strain": "strain=DCY106", "accession": "GCA_024649945.1", "taxid": 2962567, "species_taxid": 2962567, "relation_to_type": "type", "validated": true, "ani": 77.9822, "matched_fragments": 337, "total_fragments": 1216, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium branchiophilum", "strain": "strain=DSM 24789", "accession": "GCA_006716585.1", "taxid": 55197, "species_taxid": 55197, "relation_to_type": "type", "validated": true, "ani": 77.2703, "matched_fragments": 176, "total_fragments": 1216, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium oreochromis", "strain": "strain=Costa Rica 04-02-TN", "accession": "GCA_019565455.1", "taxid": 2906078, "species_taxid": 2906078, "relation_to_type": "type", "validated": true, "ani": 76.7315, "matched_fragments": 124, "total_fragments": 1216, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900143245.1", "gtdb_species": "s__Flavobacterium fryxellicola", "ani": 99.9954, "matched_fragments": 1206, "total_fragments": 1216, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_900142695.1", "gtdb_species": "s__Flavobacterium xanthum", "ani": 91.7056, "matched_fragments": 1002, "total_fragments": 1216, 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"d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003314435.2", "gtdb_species": "s__Flavobacterium petrolei", "ani": 82.7889, "matched_fragments": 774, "total_fragments": 1216, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.35", "min_intra_species_ani": "97.35", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003634755.1", "gtdb_species": "s__Flavobacterium limicola", "ani": 82.7087, "matched_fragments": 734, "total_fragments": 1216, "gtdb_taxonomy": 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"d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003688495.1", "gtdb_species": "s__Flavobacterium weaverense", "ani": 80.2194, "matched_fragments": 570, "total_fragments": 1216, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": 0.096, "cell_length": 0.544, "doubling_h": 1.271, "growth_tmp": 20.0, "optimum_tmp": 20.0, "optimum_ph": 7.141, "genome_size": 3716230.0, 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