{ "type": "genome", "identifier": "GCF_001637205.1", "organism": "Paenibacillus glacialis", "title": "Paenibacillus glacialis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001637205.1", "bioproject": "PRJNA224116", "biosample": "SAMN04574067", "wgs_master": "LVJH00000000.1", "refseq_category": "reference genome", "taxid": "494026", "species_taxid": "494026", "organism_name": "Paenibacillus glacialis", "infraspecific_name": "strain=DSM 22343", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/05/05", "asm_name": "ASM163720v1", "asm_submitter": "Korea University", "gbrs_paired_asm": "GCA_001637205.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/637/205/GCF_001637205.1_ASM163720v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5709291", "genome_size_ungapped": "5709291", "gc_percent": "40.500000", "replicon_count": "0", "scaffold_count": "80", "contig_count": "80", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001637205.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "5503", "protein_coding_gene_count": "5172", "non_coding_gene_count": "148", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-05-05", "dateModified": "2016-05-05", "datePublished": "2016-05-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Paenibacillus glacialis" ], "sample_taxid": [ "494026" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "India: Himalayas, Kafni glacier" ], "sample_host_location_id": [], "data_size": "1.630 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5709291", "Number of Sequences": "80", "Longest Sequences (bp)": "557247", "N50 (bp)": "236453", "Gap Ratio (%)": "0.000140", "GCcontent (%)": "40.7", "Number of CDSs": "5379", "Average Protein Length": "293.5", "Coding Ratio (%)": "82.9", "Number of rRNAs": "14", "Number of tRNAs": "109", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paenibacillus glacialis", "strain": "strain=DSM 22343", "accession": "GCA_001637205.1", "taxid": 494026, "species_taxid": 494026, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1865, "total_fragments": 1867, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Paenibacillus macquariensis", "strain": "strain=ATCC 23464", "accession": "GCA_900156375.1", "taxid": 948756, "species_taxid": 948756, "relation_to_type": "type", "validated": true, "ani": 87.624, "matched_fragments": 1297, "total_fragments": 1867, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus macquariensis subsp. macquariensis", "strain": "strain=DSM 2", "accession": "GCA_001637165.1", "taxid": 1468, "species_taxid": 948756, "relation_to_type": "type", "validated": true, "ani": 87.6103, "matched_fragments": 1297, "total_fragments": 1867, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus antarcticus", "strain": "strain=CECT 5836", "accession": "GCA_001637225.1", "taxid": 253703, "species_taxid": 253703, "relation_to_type": "type", "validated": true, "ani": 86.9456, "matched_fragments": 1208, "total_fragments": 1867, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus crassostreae", "strain": "strain=LPB0068", "accession": "GCA_001637335.1", "taxid": 1763538, "species_taxid": 1763538, "relation_to_type": "type", "validated": true, "ani": 79.7004, "matched_fragments": 581, "total_fragments": 1867, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus crassostreae", "strain": "strain=LPB0068", "accession": "GCA_001857945.1", "taxid": 1763538, "species_taxid": 1763538, "relation_to_type": "type", "validated": true, "ani": 79.5918, "matched_fragments": 601, "total_fragments": 1867, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus gallinarum", "strain": "strain=Sa2BVA9", "accession": "GCA_014836635.1", "taxid": 2762232, "species_taxid": 2762232, "relation_to_type": "type", "validated": true, "ani": 77.3047, "matched_fragments": 109, "total_fragments": 1867, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus brevis", "strain": "strain=MSJ-6", "accession": "GCA_018919145.1", "taxid": 2841508, "species_taxid": 2841508, "relation_to_type": "type", "validated": true, "ani": 77.0829, "matched_fragments": 61, "total_fragments": 1867, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus endophyticus", "strain": "strain=CECT 8234", "accession": "GCA_014192395.1", "taxid": 1294268, "species_taxid": 1294268, "relation_to_type": "type", "validated": true, "ani": 76.9814, "matched_fragments": 64, "total_fragments": 1867, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus silvae", "strain": "strain=CGMCC 1.12770", "accession": "GCA_014639235.1", "taxid": 1325358, "species_taxid": 1325358, "relation_to_type": "type", "validated": true, "ani": 76.963, "matched_fragments": 102, "total_fragments": 1867, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001637205.1", "gtdb_species": "s__Paenibacillus glacialis", "ani": 100.0, "matched_fragments": 1865, "total_fragments": 1867, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_900156375.1", "gtdb_species": "s__Paenibacillus macquariensis", "ani": 87.6239, "matched_fragments": 1298, "total_fragments": 1867, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.68", "min_intra_species_ani": "95.38", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.81", 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"accession": "GCF_001857945.1", "gtdb_species": "s__Paenibacillus crassostreae", "ani": 79.615, "matched_fragments": 598, "total_fragments": 1867, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001373415.1", "gtdb_species": "s__Paenibacillus dakarensis", "ani": 77.3969, "matched_fragments": 117, "total_fragments": 1867, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013359935.1", "gtdb_species": "s__Paenibacillus xylanilyticus", "ani": 77.2905, "matched_fragments": 104, "total_fragments": 1867, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018919145.1", "gtdb_species": "s__Paenibacillus_A sp018919145", "ani": 77.1762, "matched_fragments": 61, "total_fragments": 1867, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014639235.1", "gtdb_species": "s__Paenibacillus silvae", "ani": 76.963, "matched_fragments": 102, "total_fragments": 1867, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.52", "min_intra_species_ani": "95.24", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.86", "num_clustered_genomes": 5, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.302, "cell_length": 0.342, "doubling_h": 0.565, "growth_tmp": 21.0, "optimum_tmp": 22.0, "optimum_ph": 7.0, "genome_size": 5700092.0, "gc_content": 50.283, "coding_genes": 5381.029, "rRNA16S_genes": 10.237, "tRNA_genes": 93.313, "gram_stain": 1.0, "sporulation": 1.0, "motility": 1.0, "range_salinity": 0.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 0.9, "thermophilic_range_tmp": 0.033, "psychrophilic_range_tmp": 0.066, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Paenibacillus", "glacialis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }