{
    "type": "genome",
    "identifier": "GCF_001637285.1",
    "organism": "Pseudomonas thivervalensis",
    "title": "Pseudomonas thivervalensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Institut de Recherches Microbiologiques - Wiame",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001637285.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04017594",
        "wgs_master": "LRSO00000000.1",
        "refseq_category": "na",
        "taxid": "86265",
        "species_taxid": "86265",
        "organism_name": "Pseudomonas thivervalensis",
        "infraspecific_name": "strain=LMG 21626",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/05/05",
        "asm_name": "ASM163728v1",
        "asm_submitter": "Institut de Recherches Microbiologiques - Wiame",
        "gbrs_paired_asm": "GCA_001637285.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/637/285/GCF_001637285.1_ASM163728v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6551379",
        "genome_size_ungapped": "6551379",
        "gc_percent": "61.000000",
        "replicon_count": "0",
        "scaffold_count": "23",
        "contig_count": "23",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001637285.1-RS_2024_04_24",
        "annotation_date": "2024-04-24",
        "total_gene_count": "5817",
        "protein_coding_gene_count": "5692",
        "non_coding_gene_count": "65",
        "pubmed_id": "27007713"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-05-05",
    "dateModified": "2016-05-05",
    "datePublished": "2016-05-05",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pseudomonas thivervalensis"
        ],
        "sample_taxid": [
            "86265"
        ],
        "sample_host_organism": [
            "Brassica napus"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "France: Sexy-les-Bois"
        ],
        "sample_host_location_id": [],
        "data_size": "1.827 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6551379",
        "Number of Sequences": "23",
        "Longest Sequences (bp)": "911853",
        "N50 (bp)": "427019",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "61.2",
        "Number of CDSs": "5731",
        "Average Protein Length": "333.8",
        "Coding Ratio (%)": "87.6",
        "Number of rRNAs": "3",
        "Number of tRNAs": "61",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Pseudomonas thivervalensis",
                "strain": "strain=DSM 13194",
                "accession": "GCA_001269655.1",
                "taxid": 86265,
                "species_taxid": 86265,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9972,
                "matched_fragments": 2163,
                "total_fragments": 2171,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Pseudomonas zanjanensis",
                "strain": "strain=SWRI12",
                "accession": "GCA_014268745.2",
                "taxid": 2745496,
                "species_taxid": 2745496,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.4824,
                "matched_fragments": 1819,
                "total_fragments": 2171,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas kilonensis",
                "strain": "strain=DSM 13647",
                "accession": "GCA_001269885.1",
                "taxid": 132476,
                "species_taxid": 132476,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.4155,
                "matched_fragments": 1826,
                "total_fragments": 2171,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas brassicacearum subsp. brassicacearum",
                "strain": "strain=CCUG 51508",
                "accession": "GCA_008801605.1",
                "taxid": 86264,
                "species_taxid": 930166,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.2177,
                "matched_fragments": 1887,
                "total_fragments": 2171,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas brassicacearum",
                "strain": "strain=JCM 11938",
                "accession": "GCA_012034345.1",
                "taxid": 930166,
                "species_taxid": 930166,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 92.1705,
                "matched_fragments": 1875,
                "total_fragments": 2171,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas bijieensis",
                "strain": "strain=L22-9",
                "accession": "GCA_013347965.1",
                "taxid": 2681983,
                "species_taxid": 2681983,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.4314,
                "matched_fragments": 1861,
                "total_fragments": 2171,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas viciae",
                "strain": "strain=11K1",
                "accession": "GCA_004786035.1",
                "taxid": 2505979,
                "species_taxid": 2505979,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.4784,
                "matched_fragments": 1752,
                "total_fragments": 2171,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas rhizophila",
                "strain": "strain=S211",
                "accession": "GCA_003033885.1",
                "taxid": 2045200,
                "species_taxid": 2045200,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.2184,
                "matched_fragments": 1645,
                "total_fragments": 2171,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas sputi",
                "strain": "strain=BML-PP014",
                "accession": "GCA_021603585.1",
                "taxid": 2892325,
                "species_taxid": 2892325,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.5298,
                "matched_fragments": 1317,
                "total_fragments": 2171,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas pharyngis",
                "strain": "strain=BML-PP036",
                "accession": "GCA_021602345.1",
                "taxid": 2892333,
                "species_taxid": 2892333,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.4803,
                "matched_fragments": 1359,
                "total_fragments": 2171,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas marginalis",
                "strain": "strain=DSM 13124",
                "accession": "GCA_007858155.1",
                "taxid": 298,
                "species_taxid": 298,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 83.7813,
                "matched_fragments": 1293,
                "total_fragments": 2171,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas brassicae",
                "strain": "strain=MAFF 212427",
                "accession": "GCA_010671725.1",
                "taxid": 2708063,
                "species_taxid": 2708063,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.229,
                "matched_fragments": 866,
                "total_fragments": 2171,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001269655.1",
                "gtdb_species": "s__Pseudomonas_E thivervalensis",
                "ani": 99.9972,
                "matched_fragments": 2163,
                "total_fragments": 2171,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.35",
                "min_intra_species_ani": "98.81",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 6,
                "status": "conclusive"
            },
            {
                "accession": "GCF_014268745.2",
                "gtdb_species": "s__Pseudomonas_E sp014268745",
                "ani": 93.4823,
                "matched_fragments": 1819,
                "total_fragments": 2171,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.32",
                "min_intra_species_ani": "95.56",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_900581005.1",
                "gtdb_species": "s__Pseudomonas_E sp900581005",
                "ani": 93.1063,
                "matched_fragments": 1840,
                "total_fragments": 2171,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001307275.1",
                "gtdb_species": "s__Pseudomonas_E fluorescens_AA",
                "ani": 92.8373,
                "matched_fragments": 1859,
                "total_fragments": 2171,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.99",
                "min_intra_species_ani": "95.90",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 18,
                "status": "-"
            },
            {
                "accession": "GCF_001269885.1",
                "gtdb_species": "s__Pseudomonas_E kilonensis",
                "ani": 92.415,
                "matched_fragments": 1826,
                "total_fragments": 2171,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.12",
                "min_intra_species_ani": "95.91",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 15,
                "status": "-"
            },
            {
                "accession": "GCF_008801605.1",
                "gtdb_species": "s__Pseudomonas_E brassicacearum",
                "ani": 92.2082,
                "matched_fragments": 1888,
                "total_fragments": 2171,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.43",
                "min_intra_species_ani": "96.48",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 21,
                "status": "-"
            },
            {
                "accession": "GCF_009601685.2",
                "gtdb_species": "s__Pseudomonas_E kilonensis_B",
                "ani": 91.8424,
                "matched_fragments": 1770,
                "total_fragments": 2171,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.30",
                "min_intra_species_ani": "99.26",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_001623525.1",
                "gtdb_species": "s__Pseudomonas_E fluorescens_Q",
                "ani": 91.5208,
                "matched_fragments": 1791,
                "total_fragments": 2171,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.03",
                "min_intra_species_ani": "97.11",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 14,
                "status": "-"
            },
            {
                "accession": "GCF_018325905.1",
                "gtdb_species": "s__Pseudomonas_E sp018325905",
                "ani": 91.4127,
                "matched_fragments": 1802,
                "total_fragments": 2171,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_019141525.1",
                "gtdb_species": "s__Pseudomonas_E fluorescens_T",
                "ani": 88.6721,
                "matched_fragments": 1713,
                "total_fragments": 2171,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.80",
                "min_intra_species_ani": "98.76",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_013608025.1",
                "gtdb_species": "s__Pseudomonas_E neoaurantiaca",
                "ani": 88.6087,
                "matched_fragments": 1725,
                "total_fragments": 2171,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.248,
        "cell_length": 0.186,
        "doubling_h": -0.025,
        "growth_tmp": 28.0,
        "optimum_tmp": 28.0,
        "optimum_ph": 7.258,
        "genome_size": 6611452.4,
        "gc_content": 61.2,
        "coding_genes": 5204.79,
        "rRNA16S_genes": 5.319,
        "tRNA_genes": 67.35,
        "gram_stain": 0.0,
        "sporulation": 0.013,
        "motility": 0.975,
        "range_salinity": 0.666,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.988,
        "coccus_cell_shape": 0.011,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Pseudomonas",
        "thivervalensis"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}