{ "type": "genome", "identifier": "GCF_001639105.2", "organism": "Azospirillum humicireducens", "title": "Azospirillum humicireducens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Guangdong Institute of Eco-Environmental and Soil Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001639105.2", "bioproject": "PRJNA224116", "biosample": "SAMN04858219", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1226968", "species_taxid": "1226968", "organism_name": "Azospirillum humicireducens", "infraspecific_name": "strain=SgZ-5", "isolate": "na", "version_status": "latest", "assembly_level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/04/18", "asm_name": "ASM163910v2", "asm_submitter": "Guangdong Institute of Eco-Environmental and Soil Sciences", "gbrs_paired_asm": "GCA_001639105.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/639/105/GCF_001639105.2_ASM163910v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6862695", "genome_size_ungapped": "6834567", "gc_percent": "67.500000", "replicon_count": "7", "scaffold_count": "7", "contig_count": "7", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-05", "total_gene_count": "6139", "protein_coding_gene_count": "5885", "non_coding_gene_count": "84", "pubmed_id": "23264502" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-04-18", "dateModified": "2018-04-18", "datePublished": "2018-04-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Azospirillum humicireducens" ], "sample_taxid": [ "1226968" ], 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{ "organism_name": "Vineibacter terrae", "strain": "strain=CC-CFT640", "accession": "GCA_008039615.1", "taxid": 2586908, "species_taxid": 2586908, "relation_to_type": "type", "validated": true, "ani": 76.4144, "matched_fragments": 533, "total_fragments": 2285, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001639105.2", "gtdb_species": "s__Azospirillum humicireducens", "ani": 99.9975, "matched_fragments": 2275, "total_fragments": 2285, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Azospirillales;f__Azospirillaceae;g__Azospirillum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000283655.1", "gtdb_species": "s__Azospirillum lipoferum_C", 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