{ "type": "genome", "identifier": "GCF_001642795.1", "organism": "Pseudomonas viridiflava", "title": "Pseudomonas viridiflava", "description": "na", "data type": "Genome sequencing and assembly", "organization": "New Zealand Institute for Plant & Food research", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001642795.1", "bioproject": "PRJNA224116", "biosample": "SAMN04102828", "wgs_master": "LKEH00000000.1", "refseq_category": "na", "taxid": "33069", "species_taxid": "33069", "organism_name": "Pseudomonas viridiflava", "infraspecific_name": "strain=ICMP 2848", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/05/12", "asm_name": "ASM164279v1", "asm_submitter": "New Zealand Institute for Plant & Food research", "gbrs_paired_asm": "GCA_001642795.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/642/795/GCF_001642795.1_ASM164279v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5918918", "genome_size_ungapped": "5918010", "gc_percent": "59.500000", "replicon_count": "0", "scaffold_count": "48", "contig_count": "48", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001642795.1-RS_2024_03_27", "annotation_date": "2024-03-27", "total_gene_count": "5289", "protein_coding_gene_count": "5177", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-05-12", "dateModified": "2016-05-12", "datePublished": "2016-05-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas viridiflava" ], "sample_taxid": [ "33069" ], "sample_host_organism": [ "Phaseolus vulgaris" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Switzerland" ], "sample_host_location_id": [], "data_size": "1.667 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5918918", "Number of Sequences": "48", "Longest Sequences (bp)": "573694", "N50 (bp)": "453916", "Gap Ratio (%)": "0.020037", "GCcontent (%)": "59.4", "Number of CDSs": "5304", "Average Protein Length": "325.9", "Coding Ratio (%)": "87.6", "Number of rRNAs": "2", "Number of tRNAs": "53", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas viridiflava", "strain": "strain=ICMP 2848", "accession": "GCA_001642795.1", "taxid": 33069, "species_taxid": 33069, 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"quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }