{ "type": "genome", "identifier": "GCF_001642805.2", "organism": "Serratia surfactantfaciens", "title": "Serratia surfactantfaciens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shaanxi normal university", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001642805.2", "bioproject": "PRJNA224116", "biosample": "SAMN04226521", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2741499", "species_taxid": "2741499", "organism_name": "Serratia surfactantfaciens", "infraspecific_name": "strain=YD25", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/08/23", "asm_name": "ASM164280v2", "asm_submitter": "Shaanxi normal university", "gbrs_paired_asm": "GCA_001642805.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/642/805/GCF_001642805.2_ASM164280v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5117644", "genome_size_ungapped": "5117644", "gc_percent": "59.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001642805.2-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "4886", "protein_coding_gene_count": "4747", "non_coding_gene_count": "114", "pubmed_id": "27809759" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-08-23", "dateModified": "2016-08-23", "datePublished": "2016-08-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Serratia surfactantfaciens" ], "sample_taxid": [ "2741499" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Fujian" ], "sample_host_location_id": [], "data_size": "1.427 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.44, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5117644", "Number of Sequences": "1", "Longest Sequences (bp)": "5117644", "N50 (bp)": "5117644", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.6", "Number of CDSs": "4809", "Average Protein Length": "312.9", "Coding Ratio (%)": "88.2", "Number of rRNAs": "13", "Number of tRNAs": "85", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Serratia surfactantfaciens", "strain": "strain=YD25", "accession": "GCA_001642805.2", "taxid": 2741499, "species_taxid": 2741499, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1705, "total_fragments": 1705, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Serratia nematodiphila", "strain": "strain=DSM 21420", "accession": "GCA_000738675.1", "taxid": 458197, "species_taxid": 458197, "relation_to_type": "suspected-type", "validated": true, "ani": 94.5005, "matched_fragments": 1561, "total_fragments": 1705, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia nematodiphila", "strain": "strain=CGMCC 1.6853", "accession": "GCA_900101535.1", "taxid": 458197, "species_taxid": 458197, "relation_to_type": "suspected-type", "validated": true, "ani": 94.4752, "matched_fragments": 1525, "total_fragments": 1705, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia nevei", "strain": "strain=S15", "accession": "GCA_008364245.1", "taxid": 2703794, "species_taxid": 2703794, "relation_to_type": "type", "validated": true, "ani": 94.4373, "matched_fragments": 1527, "total_fragments": 1705, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia marcescens", "strain": "strain=ATCC 13880", "accession": "GCA_017654245.1", "taxid": 615, "species_taxid": 615, "relation_to_type": "suspected-type", "validated": true, "ani": 94.2553, "matched_fragments": 1513, "total_fragments": 1705, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia marcescens", "strain": "strain=ATCC 13880 substr. 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